Evidence map›Paper›PMID 38300368›Full record

ArticleArchives of virology2024

Complete genome sequence of polygonatum kingianum mottle virus infecting Polygonatum kingianum Coll. et Hemsl in Yunnan, China.

Maosen Wang, Xiaoxia Su, Fan Zhang, Tiantian Wang, Kuanyu Zheng, Zhongkai Zhang

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Maosen WangBiotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences/Yunnan Provincial Key Lab of Agricultural Biotechnology, Kunming, Yunnan, 650205, P. R. China.
Xiaoxia SuBiotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences/Yunnan Provincial Key Lab of Agricultural Biotechnology, Kunming, Yunnan, 650205, P. R. China.
Fan ZhangBiotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences/Yunnan Provincial Key Lab of Agricultural Biotechnology, Kunming, Yunnan, 650205, P. R. China.
Tiantian WangBiotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences/Yunnan Provincial Key Lab of Agricultural Biotechnology, Kunming, Yunnan, 650205, P. R. China.
Kuanyu ZhengBiotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences/Yunnan Provincial Key Lab of Agricultural Biotechnology, Kunming, Yunnan, 650205, P. R. China. zky@yaas.org.cn.ORCID http://orcid.org/0000-0001-9991-4651
Zhongkai ZhangBiotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences/Yunnan Provincial Key Lab of Agricultural Biotechnology, Kunming, Yunnan, 650205, P. R. China. zkk@yaas.org.cn.

Funding

Fund for Reserve Talents of Young and Middle-aged Academic and Technical Leaders of Yunnan Province 202305AC160026Major Science and Technology Program of Yunnan Province 202202AE090022National Natural Science Foundation of China 31660508National Natural Science Foundation of China 32160620Yunnan Seed Laboratory 202205AR070001
6 · The paper itself

Abstract

The complete genome sequence of a putative novel potyvirus, tentatively named "polygonatum kingianum mottle virus" (PKgMV; GenBank accession no. ON428226), infecting Polygonatum kingianum in China, was obtained by next-generation sequencing (NGS), reverse transcription polymerase chain reaction (RT-PCR), and rapid amplification of cDNA ends (RACE). PKgMV exhibits the typical genome organization and characteristics of members of the genus Potyvirus, with a length of 10,002 nucleotides (nt) and a large open reading frame (nt 108 to 9,746) encoding a polyprotein of 3,212 amino acids (aa) (363.68 kDa). Pairwise comparisons revealed that the PKgMV polyprotein shares 50.5-68.6% nt and 43.1-72.2% aa sequence identity with reported members of the genus Potyvirus. Moreover, phylogenetic analysis indicated that PKgMV is closely related to polygonatum kingianum virus 1 (PKgV1; accession no. MK427056). These results suggest that the PKgMV is a novel member of the genus Potyvirus of the family Potyviridae.

Indexed as

PolygonatumPotyvirusAmino AcidsChinaNucleotidesPhylogenyPolyproteinsAmino AcidsNucleotidesPolyproteins

Identifiers

PMID38300368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.