Evidence map›Paper›PMID 38300332›Full record

ArticleAmino acids2024

Molecular properties of linear amino acids in water.

Roman Boča, Richard Imrich, Juraj Štofko, Beáta Vranovičová, Cyril Rajnák

Open access · goldAbstract read
In one paragraph

Article in Amino acids, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Roman BočaFaculty of Health Sciences, University of SS Cyril and Methodius, 91701, Trnava, Slovakia. roman.boca@ucm.sk.
Richard ImrichFaculty of Health Sciences, University of SS Cyril and Methodius, 91701, Trnava, Slovakia.
Juraj ŠtofkoFaculty of Health Sciences, University of SS Cyril and Methodius, 91701, Trnava, Slovakia.
Beáta VranovičováFaculty of Natural Sciences, University of SS Cyril and Methodius, 91701, Trnava, Slovakia.
Cyril RajnákFaculty of Natural Sciences, University of SS Cyril and Methodius, 91701, Trnava, Slovakia.
University of Ss. Cyril and Methodius in Trnava · SK

Funding

Vedecká Grantová Agentúra MŠVVaŠ SR a SAV VEGA 1/0191/22
6 · The paper itself

Abstract

Four linear amino acids of increased separation of the carboxyl and amino groups, namely glycine (aminoacetic acid), β-alanine (3-aminopropanoic acid), GABA (4-aminobutanoic acid) and DAVA (5-aminopentanoic acid), have been studied by quantum chemical ab initio and DFT methods including the solvent effect in order to get electronic structure and molecular descriptors, such as ionisation energy, electron affinity, molecular electronegativity, chemical hardness, electrophilicity index, dipole moment, quadrupole moment and dipole polarizability. Thermodynamic functions (zero-point energy, inner energy, enthalpy, entropy, and the Gibbs energy) were evaluated after the complete vibrational analysis at the true energy minimum provided by the full geometry optimization. Reaction Gibbs energy allows evaluating the absolute redox potentials on reduction and/or oxidation. The non-local non-additive molecular descriptors were compared along the series showing which of them behave as extensive, varying in match with the molar mass and/or separation of the carboxyl and amino groups. Amino acidic forms and zwitterionic forms of the substances were studied in parallel in order to compare their relative stability and redox properties. In total, 24 species were investigated by B3LYP/def2-TZVPD method (M1) including neutral molecules, molecular cations and molecular anions. For comparison, MP2/def2-TZVPD method (M2) with full geometry optimization and vibrational analysis in water has been applied for 12 species; analogously, for 24 substances, DLPNO-CCSD(T)/aug-cc-pVTZ method (M3) has been applied in the geometry obtained by MP2 and/or B3LYP. It was found that the absolute oxidation potential correlates with the adiabatic ionisation energy; the absolute reduction potential correlates with the adiabatic electron affinity and the electrophilicity index. In order to validate the used methodology with experimental vertical ionisation energies and vibrational spectrum obtained in gas phase, calculations were done also in vacuo.

Indexed as

Amino AcidsWaterbeta-Alaninegamma-Aminobutyric AcidGlycineAmino Acidsbeta-Alaninegamma-Aminobutyric AcidGlycineWaterAb initio calculationsDFT calculationsGABAGlycineMolecular descriptorsβ-Alanineδ-Aminovaleric acid

Identifiers

PMID38300332
PMCPMC10834582
OpenAlexW4391436192

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.