Evidence map›Paper›PMID 38299382›Full record

ArticleThe Plant cell2024

Nudix hydrolase 23 post-translationally regulates carotenoid biosynthesis in plants.

Sombir Rao, Hongbo Cao, Franz Joseph O'Hanna, Xuesong Zhou, Andy Lui, Emalee Wrightstone, Tara Fish, Yong Yang, Theodore Thannhauser, Lailiang Cheng and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

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  15. Frontiers in plant science · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Sombir RaoRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-5955-3940
Hongbo CaoRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-5652-4100
Franz Joseph O'HannaRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-4936-8645
Xuesong ZhouRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-8381-1826
Andy LuiRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-9604-7676
Emalee WrightstoneRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0001-7296-8932
Tara FishRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-6018-2438
Yong YangRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-8162-5824
Theodore ThannhauserRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-6304-0216
Lailiang ChengHorticulture Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0003-1759-9761
Natalia DudarevaDepartment of Biochemistry, Purdue University, West Lafayette, IN 47907-2063, USA.ORCID 0000-0003-0777-7763
Li LiRobert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA.ORCID 0000-0002-4352-4061
Cornell University · USHebei Agricultural University · CNPurdue University West Lafayette · US

Funding

National Natural Science Foundation of ChinaUSDA National Institute of Food and Agriculture
6 · The paper itself

Abstract

Carotenoids are essential for photosynthesis and photoprotection. Plants must evolve multifaceted regulatory mechanisms to control carotenoid biosynthesis. However, the regulatory mechanisms and the regulators conserved among plant species remain elusive. Phytoene synthase (PSY) catalyzes the highly regulated step of carotenogenesis and geranylgeranyl diphosphate synthase (GGPPS) acts as a hub to interact with GGPP-utilizing enzymes for the synthesis of specific downstream isoprenoids. Here, we report a function of Nudix hydrolase 23 (NUDX23), a Nudix domain-containing protein, in post-translational regulation of PSY and GGPPS for carotenoid biosynthesis. NUDX23 expresses highly in Arabidopsis (Arabidopsis thaliana) leaves. Overexpression of NUDX23 significantly increases PSY and GGPPS protein levels and carotenoid production, whereas knockout of NUDX23 dramatically reduces their abundances and carotenoid accumulation in Arabidopsis. NUDX23 regulates carotenoid biosynthesis via direct interactions with PSY and GGPPS in chloroplasts, which enhances PSY and GGPPS protein stability in a large PSY-GGPPS enzyme complex. NUDX23 was found to co-migrate with PSY and GGPPS proteins and to be required for the enzyme complex assembly. Our findings uncover a regulatory mechanism underlying carotenoid biosynthesis in plants and offer promising genetic tools for developing carotenoid-enriched food crops.

Indexed as

ArabidopsisArabidopsis ProteinsCarotenoidsGene Expression Regulation, PlantChloroplastsFarnesyltranstransferaseGeranylgeranyl-Diphosphate GeranylgeranyltransferaseNudix HydrolasesPlant LeavesPlants, Genetically ModifiedProtein Processing, Post-TranslationalPyrophosphatasesArabidopsis ProteinsCarotenoidsFarnesyltranstransferaseGeranylgeranyl-Diphosphate GeranylgeranyltransferaseNudix HydrolasesPyrophosphatases

Identifiers

PMID38299382
PMCPMC11653588
OpenAlexW4391439451

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.