Evidence map›Paper›PMID 38297033›Full record

ArticleNature communications2024

Reaction hijacking inhibition of Plasmodium falciparum asparagine tRNA synthetase.

Stanley C Xie, Yinuo Wang, Craig J Morton, Riley D Metcalfe, Con Dogovski, Charisse Flerida A Pasaje, Elyse Dunn, Madeline R Luth, Krittikorn Kumpornsin, Eva S Istvan and 34 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Structure-Guided Optimization of Novel Inhibitors ofJournal of medicinal chemistry · 2026
    Article
  2. Potent reaction hijacking inhibitors ofbioRxiv : the preprint server for biology · 2026
    Article
  3. Identification of an Orally Efficacious Imidazo[4,5-Journal of medicinal chemistry · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Covalent inhibition ofiScience · 2025
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

44 authors at 18 institutions in 6 countries.

Stanley C Xie *Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0001-7003-4677
Yinuo Wang *School of Pharmacy, University College London, London, WC1N 1AX, UK.ORCID 0009-0009-2982-6002
Craig J Morton *Biomedical Manufacturing Program, CSIRO, Clayton South, VIC, Australia.ORCID 0000-0001-5452-5193
Riley D Metcalfe *Center for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.ORCID 0000-0002-7154-780X
Con DogovskiDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Charisse Flerida A PasajeDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0002-9780-3680
Elyse DunnDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0002-5941-2187
Madeline R LuthDepartment of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.
Krittikorn KumpornsinParasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, CB10 1SA, UK.
Eva S IstvanDivision of Infectious Diseases, Department of Medicine, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0002-8666-3248
Joon Sung ParkResearch Institute of Pharmaceutical Sciences and Natural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.ORCID 0000-0002-1575-1849
Kate J FairhurstCenter for Malaria Therapeutics and Antimicrobial Resistance, Columbia University Medical Center, New York, NY, 10032, USA.
Nutpakal KetprasitDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0001-8750-0187
Tomas YeoCenter for Malaria Therapeutics and Antimicrobial Resistance, Columbia University Medical Center, New York, NY, 10032, USA.ORCID 0000-0003-2923-6060
Okan YildirimChemical Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Mathamsanqa N BhebheSchool of Chemistry, University of Sydney, Camperdown, NSW, 2006, Australia.ORCID 0000-0001-8131-8499
Dana M KlugSchool of Pharmacy, University College London, London, WC1N 1AX, UK.
Peter J RutledgeSchool of Chemistry, University of Sydney, Camperdown, NSW, 2006, Australia.ORCID 0000-0002-0767-5196
Luiz C GodoyDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0001-6981-377X
Sumanta DeyDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0002-5945-976X
Mariana Laureano De SouzaDepartment of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0003-1886-3878
Jair L Siqueira-NetoDepartment of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA.
Yawei DuDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0002-0829-1901
Tanya PuhalovichDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0001-5199-7267
Mona AminiDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Gerry ShamiDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0003-2094-1740
Duangkamon LoesbanluechaiParasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, CB10 1SA, UK.
Shuai NieMelbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.
Nicholas WilliamsonMelbourne Mass Spectrometry and Proteomics Facility, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia.ORCID 0000-0002-2173-3452
Gouranga P JanaTCG Lifesciences Private Limited, Salt-Lake Electronics Complex, Kolkata, India.
Bikash C MaityTCG Lifesciences Private Limited, Salt-Lake Electronics Complex, Kolkata, India.
Patrick ThomsonSchool of Chemistry, The University of Edinburgh, Edinburgh, EH9 3JJ, UK.ORCID 0000-0001-9831-9199
Thomas FoleySchool of Chemistry, The University of Edinburgh, Edinburgh, EH9 3JJ, UK.
Derek S TanChemical Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-7956-9659
Jacquin C NilesDepartment of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.ORCID 0000-0002-6250-8796
Byung Woo HanResearch Institute of Pharmaceutical Sciences and Natural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea.ORCID 0000-0001-7571-3791
Daniel E GoldbergDivision of Infectious Diseases, Department of Medicine, Washington University in St. Louis, St. Louis, MO, USA.ORCID 0000-0003-3529-8399
Jeremy BurrowsMedicines for Malaria Venture, 20, Route de Pré-Bois, 1215, Geneva 15, Switzerland.ORCID 0000-0001-8448-6068
David A FidockCenter for Malaria Therapeutics and Antimicrobial Resistance, Columbia University Medical Center, New York, NY, 10032, USA.ORCID 0000-0001-6753-8938
Marcus C S LeeParasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, CB10 1SA, UK.
Elizabeth A WinzelerDepartment of Pediatrics, School of Medicine, University of California, San Diego, La Jolla, CA, 92093, USA. ewinzeler@health.ucsd.edu.
Michael D W GriffinDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia. mgriffin@unimelb.edu.au.ORCID 0000-0001-9845-7735
Matthew H ToddSchool of Pharmacy, University College London, London, WC1N 1AX, UK. matthew.todd@ucl.ac.uk.ORCID 0000-0001-7096-4751
Leann TilleyDepartment of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, 3010, Australia. ltilley@unimelb.edu.au.ORCID 0000-0001-9910-0199
The University of Melbourne · AUMassachusetts Institute of Technology · USUniversity of California San Diego · USColumbia University Irving Medical Center · USMemorial Sloan Kettering Cancer Center · USSeoul National University · KRTCG Lifesciences (India) · INThe University of Sydney · AUUniversity College London · GBUniversity of Edinburgh · GBWashington University in St. Louis · USCSIRO Manufacturing · AUGenomics England · GBMedicines for Malaria Venture · CHNational Cancer Institute · USScripps Research Institute · USUniversity of Dundee · GBWellcome Sanger Institute · GB

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Defining the resistome in P. falciparum: evolution and mechanismR01AI169892 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Daniel E. Goldberg, Elizabeth A Winzeler · 2023 to 2026
$4.4M
Discovery of long-acting, chemoprotective antimalarial compoundsR01AI152533 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2020 to 2024
$3.5M
Target-specific antimalarial compound identification using phenotypic assaysR01AI141543 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI NILES, JACQUIN C · 2019 to 2022
$1.5M
NCI NIH HHS P30 CA008748NIAID NIH HHS R01 AI141543NIAID NIH HHS R01 AI152533NIAID NIH HHS R01 AI169892NIGMS NIH HHS T32 GM008666Wellcome TrustWellcome Trust 206194/Z/17/Z
6 · The paper itself

Abstract

Malaria poses an enormous threat to human health. With ever increasing resistance to currently deployed drugs, breakthrough compounds with novel mechanisms of action are urgently needed. Here, we explore pyrimidine-based sulfonamides as a new low molecular weight inhibitor class with drug-like physical parameters and a synthetically accessible scaffold. We show that the exemplar, OSM-S-106, has potent activity against parasite cultures, low mammalian cell toxicity and low propensity for resistance development. In vitro evolution of resistance using a slow ramp-up approach pointed to the Plasmodium falciparum cytoplasmic asparaginyl-tRNA synthetase (PfAsnRS) as the target, consistent with our finding that OSM-S-106 inhibits protein translation and activates the amino acid starvation response. Targeted mass spectrometry confirms that OSM-S-106 is a pro-inhibitor and that inhibition of PfAsnRS occurs via enzyme-mediated production of an Asn-OSM-S-106 adduct. Human AsnRS is much less susceptible to this reaction hijacking mechanism. X-ray crystallographic studies of human AsnRS in complex with inhibitor adducts and docking of pro-inhibitors into a model of Asn-tRNA-bound PfAsnRS provide insights into the structure-activity relationship and the selectivity mechanism.

Indexed as

AntimalarialsAspartate-tRNA LigaseAnimalsAsparagineHumansMammalsPlasmodium falciparumRNA, Transfer, Amino AcylAntimalarialsAsparagineasparaginyl-tRNA synthetaseAspartate-tRNA LigaseRNA, Transfer, Amino Acyl

Identifiers

PMID38297033
PMCPMC10831071
OpenAlexW4391385450

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.