ArticleScientific data2024
Chromosome-level genome assembly and annotation of the yellow grouper, Epinephelus awoara.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Reference-Guided Chromosome-Scale Genome Assembly With Insights on Population Genomics of the Atlantic Goliath Grouper (Ecology and evolution · 2026Article
- Chromosome-level genome assembly and annotation of potato grouper (Epinephelus tukula).Scientific data · 2026Article
- Assembling chromosome-level genomes of male and female Chanodichthys mongolicus using PacBio HiFi reads and Hi-C technologies.Scientific data · 2025Article
- Chromosome-level genome assembly and annotation of the camouflage grouper (Epinephelus polyphekadion).Scientific data · 2024Article
- Gap-free telomere-to-telomere haplotype assembly of the tomato hind (Cephalopholis sonnerati).Scientific data · 2024Article
- Chromosome-level genome assembly and annotation of the Spinibarbus caldwelli.Scientific data · 2024Article
- Innovative approach for high-throughput exploiting sex-specific markers in Japanese parrotfish Oplegnathus fasciatus.GigaScience · 2024Article
- Chlomito: a novel tool for precise elimination of organelle genome contamination from nuclear genome assembly.Frontiers in plant science · 2024Article
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Authors and funding
10 authors.
Funding
Abstract
Epinephelus awoara, as known as yellow grouper, is a significant economic marine fish that has been bred artificially in China. However, the genetic structure and evolutionary history of yellow grouper remains largely unknown. Here, this work presents the high-quality chromosome-level genome assembly of yellow grouper using PacBio single molecule sequencing technique (SMRT) and High-through chromosome conformation capture (Hi-C) technologies. The 984.48 Mb chromosome-level genome of yellow grouper was assembled, with a contig N50 length of 39.77 Mb and scaffold N50 length of 41.39 Mb. Approximately 99.76% of assembled sequences were anchored into 24 pseudo-chromosomes with the assistance of Hi-C reads. Furthermore, approximately 41.17% of the genome was composed of repetitive elements. In total, 24,541 protein-coding genes were predicted, of which 22,509 (91.72%) genes were functionally annotated. The highly accurate, chromosome-level reference genome assembly and annotation are crucial to the understanding of population genetic structure, adaptive evolution and speciation of the yellow grouper.
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