Evidence map›Paper›PMID 38296993›Full record

ArticleNature communications2024

Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder.

BaDoi N Phan, Madelyn H Ray, Xiangning Xue, Chen Fu, Robert J Fenster, Stephen J Kohut, Jack Bergman, Suzanne N Haber, Kenneth M McCullough, Madeline K Fish and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  7. Article
  8. Parkinson's Disease Patient-Specific Striatum Organoids Show Hallmarks of Increased Inflammation.Movement disorders : official journal of the Movement Disorder Society · 2026
    Article
  9. Review
  10. Cross-species consensus atlas of the primate basal ganglia.bioRxiv : the preprint server for biology · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 1 country.

BaDoi N PhanComputational Biology Department, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.ORCID 0000-0001-6331-5980
Madelyn H RayDepartment of Pharmacology, Physiology & Biophysics, Boston University School of Medicine, Boston, MA, 02118, USA.
Xiangning XueDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA, 15213, USA.ORCID 0000-0002-5775-1193
Chen FuDepartment of Psychiatry, University of Massachusetts Chan Medical School, Worcester, MA, 01605, USA.
Robert J FensterDepartment of Psychiatry, Harvard Medical School, Boston, MA, 02115, USA.
Stephen J KohutDepartment of Psychiatry, Harvard Medical School, Boston, MA, 02115, USA.ORCID 0000-0002-6906-8818
Jack BergmanDepartment of Psychiatry, Harvard Medical School, Boston, MA, 02115, USA.
Suzanne N HaberDepartment of Psychiatry, Harvard Medical School, Boston, MA, 02115, USA.
Kenneth M McCulloughBasic Neuroscience Division, Department of Psychiatry, Harvard Medical School, McLean Hospital, Belmont, MA, 02478, USA.ORCID 0000-0003-4908-2302
Madeline K FishCenter for Systems Neuroscience, Boston University, Boston, MA, 02118, USA.ORCID 0000-0002-7796-7477
Jill R GlausierDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15219, USA.ORCID 0000-0001-9838-3414
Qiao SuComputational Biology Department, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Allison E TiptonCenter for Systems Neuroscience, Boston University, Boston, MA, 02118, USA.
David A LewisDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15219, USA.ORCID 0000-0002-3225-6778
Zachary FreybergDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15219, USA.ORCID 0000-0001-6460-0118
George C TsengDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA, 15213, USA.ORCID 0000-0002-5447-1014
Shelley J RussekDepartment of Pharmacology, Physiology & Biophysics, Boston University School of Medicine, Boston, MA, 02118, USA.
Yuriy AlekseyevDepartment of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA, 02118, USA.ORCID 0000-0001-6105-8861
Kerry J ResslerDepartment of Psychiatry, Harvard Medical School, Boston, MA, 02115, USA.ORCID 0000-0002-5158-1103
Marianne L SeneyDepartment of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA, 15219, USA.ORCID 0000-0002-6401-9494
Andreas R PfenningComputational Biology Department, Carnegie Mellon University, Pittsburgh, PA, 15213, USA. apfenning@cmu.edu.ORCID 0000-0002-3447-9801
Ryan W LoganDepartment of Pharmacology, Physiology & Biophysics, Boston University School of Medicine, Boston, MA, 02118, USA. ryan.logan@umassmed.edu.ORCID 0000-0001-8579-015X
University of Pittsburgh · USBoston University · USHarvard University · USCarnegie Mellon University · USUniversity of Massachusetts Chan Medical School · US

Funding

Delineating the role of serotonin 5-HT2 receptors in opioid use disorders:Development of novel 5-HT2 modulators with translational studies in rodents andprimatesR01DA047130 · NIDA · NORTHEASTERN UNIVERSITY · PI BOOTH, RAYMOND G., KOHUT, STEPHEN JOHN · 2018 to 2022
$3.2M
Interpreting the regulatory mechanisms underlying the predisposition to substance use disordersDP1DA046585 · NIDA · CARNEGIE-MELLON UNIVERSITY · PI PFENNING, ANDREAS ROBERT · 2018 to 2022
$2.4M
Cell-type specific role of circadian-dependent transcription in fentanyl-induced synaptic and behavioral plasticity - SupplementR01HL150432 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LOGAN, RYAN W · 2019 to 2020
$2.0M
Molecular rhythm alterations in human post-mortem brain associated with opioid use disorderR01DA051390 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LOGAN, RYAN W, SENEY, MARIANNE L · 2020 to 2023
$1.9M
Integrating primate-rodent cell types and epigenomics to identify conservation in substance addictionF30DA053020 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PHAN, BADOI NGUYEN · 2021 to 2024
$204k
NHLBI NIH HHS R01 HL150432NIDA NIH HHS DP1 DA046585NIDA NIH HHS F30 DA053020NIDA NIH HHS R01 DA047130NIDA NIH HHS R01 DA051390
6 · The paper itself

Abstract

In brain, the striatum is a heterogenous region involved in reward and goal-directed behaviors. Striatal dysfunction is linked to psychiatric disorders, including opioid use disorder (OUD). Striatal subregions are divided based on neuroanatomy, each with unique roles in OUD. In OUD, the dorsal striatum is involved in altered reward processing, formation of habits, and development of negative affect during withdrawal. Using single nuclei RNA-sequencing, we identified both canonical (e.g., dopamine receptor subtype) and less abundant cell populations (e.g., interneurons) in human dorsal striatum. Pathways related to neurodegeneration, interferon response, and DNA damage were significantly enriched in striatal neurons of individuals with OUD. DNA damage markers were also elevated in striatal neurons of opioid-exposed rhesus macaques. Sex-specific molecular differences in glial cell subtypes associated with chronic stress were found in OUD, particularly female individuals. Together, we describe different cell types in human dorsal striatum and identify cell type-specific alterations in OUD.

Indexed as

Corpus StriatumOpioid-Related DisordersAnimalsFemaleGene Expression ProfilingHumansMacaca mulattaMaleNeurons

Identifiers

PMID38296993
PMCPMC10831093
OpenAlexW4391402215

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.