Evidence map›Paper›PMID 38295184›Full record

ArticleScience translational medicine2024

Improved immunostaining of nanostructures and cells in human brain specimens through expansion-mediated protein decrowding.

Pablo A Valdes, Chih-Chieh Jay Yu, Jenna Aronson, Debarati Ghosh, Yongxin Zhao, Bobae An, Joshua D Bernstock, Deepak Bhere, Michelle M Felicella, Mariano S Viapiano and 3 more

Abstract read
In one paragraph

Article in Science translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Principles ofbioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Astrocyte regional specialization is shaped by postnatal development.bioRxiv : the preprint server for biology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Pablo A ValdesDepartment of Neurosurgery, University of Texas Medical Branch, Galveston, TX 77555, USA.ORCID 0000-0002-6788-8003
Chih-Chieh Jay YuMedia Arts and Sciences, MIT, Cambridge, MA 02115, USA.ORCID 0000-0001-8713-0446
Jenna AronsonMedia Arts and Sciences, MIT, Cambridge, MA 02115, USA.ORCID 0000-0002-7376-8622
Debarati GhoshMcGovern Institute for Brain Research, MIT, Cambridge, MA 02139, USA.ORCID 0000-0003-2074-6742
Yongxin ZhaoMedia Arts and Sciences, MIT, Cambridge, MA 02115, USA.ORCID 0000-0003-4188-5725
Bobae AnMedia Arts and Sciences, MIT, Cambridge, MA 02115, USA.
Joshua D BernstockDepartment of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-7814-3867
Deepak BhereDepartment of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-4142-5518
Michelle M FelicellaDepartment of Pathology, University of Texas Medical Branch, Galveston, TX 77555, USA.ORCID 0000-0003-0872-5113
Mariano S ViapianoDepartment of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, NY 13210, USA.ORCID 0000-0002-8756-388X
Khalid ShahDepartment of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-5474-0974
E Antonio ChioccaDepartment of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0001-5183-1670
Edward S BoydenMedia Arts and Sciences, MIT, Cambridge, MA 02115, USA.ORCID 0000-0002-0419-3351

Funding

Expansion MicroscopyR01EB024261 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2017 to 2025
$4.6M
High-throughput approaches to local and long-range synaptic connectivityRF1MH123403 · NIMH · COLD SPRING HARBOR LABORATORY · PI BOYDEN, EDWARD S., ZADOR, ANTHONY M · 2020 to 2020
$3.3M
Multiplexed Nanoscale Protein Mapping Through Expansion Microscopy and Immuno-SABERRF1MH124606 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S., YIN, PENG · 2020 to 2020
$2.7M
High throughput assaying of circuit activity and connectivity in brain organoidsRF1MH123977 · NIMH · HARVARD UNIVERSITY · PI ARLOTTA, PAOLA, BOYDEN, EDWARD S. · 2020 to 2020
$2.5M
The infectious etiology of Alzheimer's disease revealed at nanoscale precisionR56AG069192 · NIA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI AN, BOBAE · 2020 to 2020
$1.5M
Alpha-synuclein aggregate induced synapse loss is a pathological event contributing to Lewy body dementiasR56NS117465 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI VOLPICELLI-DALEY, LAURA A. · 2020 to 2020
$769k
Howard Hughes Medical InstituteNIA NIH HHS R56 AG069192NIBIB NIH HHS R01 EB024261NIMH NIH HHS RF1 MH123403NIMH NIH HHS RF1 MH123977NIMH NIH HHS RF1 MH124606NINDS NIH HHS R56 NS117465
6 · The paper itself

Abstract

Proteins are densely packed in cells and tissues, where they form complex nanostructures. Expansion microscopy (ExM) variants have been used to separate proteins from each other in preserved biospecimens, improving antibody access to epitopes. Here, we present an ExM variant, decrowding expansion pathology (dExPath), that can expand proteins away from each other in human brain pathology specimens, including formalin-fixed paraffin-embedded (FFPE) clinical specimens. Immunostaining of dExPath-expanded specimens reveals, with nanoscale precision, previously unobserved cellular structures, as well as more continuous patterns of staining. This enhanced molecular staining results in observation of previously invisible disease marker-positive cell populations in human glioma specimens, with potential implications for tumor aggressiveness. dExPath results in improved fluorescence signals even as it eliminates lipofuscin-associated autofluorescence. Thus, this form of expansion-mediated protein decrowding may, through improved epitope access for antibodies, render immunohistochemistry more powerful in clinical science and, perhaps, diagnosis.

Indexed as

BrainNanostructuresAntibodies, MonoclonalEpitopesFormaldehydeHumansImmunohistochemistryAntibodies, MonoclonalEpitopesFormaldehyde

Identifiers

PMID38295184
PMCPMC10911838

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.