Evidence map›Paper›PMID 38294133›Full record

ArticleJournal of experimental botany2024

Dissection of the IDA promoter identifies WRKY transcription factors as abscission regulators in Arabidopsis.

Sergio Galindo-Trigo, Anne-Maarit Bågman, Takashi Ishida, Shinichiro Sawa, Siobhán M Brady, Melinka A Butenko

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
6.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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  6. Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Sergio Galindo-TrigoSection for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Norway.ORCID 0000-0003-0725-4321
Anne-Maarit BågmanDepartment of Plant Biology and Genome Center, University of California, Davis, CA, USA.ORCID 0000-0002-7586-8184
Takashi IshidaInternational Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto, Japan.ORCID 0000-0001-5167-9971
Shinichiro SawaGraduate School of Science and Technology, Kumamoto University, Kumamoto, Japan.ORCID 0000-0002-9309-9104
Siobhán M BradyDepartment of Plant Biology and Genome Center, University of California, Davis, CA, USA.ORCID 0000-0001-9424-8055
Melinka A ButenkoSection for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Norway.ORCID 0000-0003-0750-7018
Kumamoto University · JPUniversity of California, Davis · USUniversity of Oslo · NO

Funding

Department of BiosciencesNorwegian Ministry of Education and ResearchResearch Council of Norway 230849
6 · The paper itself

Abstract

Plants shed organs such as leaves, petals, or fruits through the process of abscission. Monitoring cues such as age, resource availability, and biotic and abiotic stresses allow plants to abscise organs in a timely manner. How these signals are integrated into the molecular pathways that drive abscission is largely unknown. The INFLORESCENCE DEFICIENT IN ABSCISSION (IDA) gene is one of the main drivers of floral organ abscission in Arabidopsis and is known to transcriptionally respond to most abscission-regulating cues. By interrogating the IDA promoter in silico and in vitro, we identified transcription factors that could potentially modulate IDA expression. We probed the importance of ERF- and WRKY-binding sites for IDA expression during floral organ abscission, with WRKYs being of special relevance to mediate IDA up-regulation in response to biotic stress in tissues destined for separation. We further characterized WRKY57 as a positive regulator of IDA and IDA-like gene expression in abscission zones. Our findings highlight the promise of promoter element-targeted approaches to modulate the responsiveness of the IDA signaling pathway to harness controlled abscission timing for improved crop productivity.

Indexed as

ArabidopsisArabidopsis ProteinsFlowersGene Expression Regulation, PlantPlantsPromoter Regions, GeneticTranscription FactorsArabidopsis ProteinsTranscription FactorsAbscissioncis-elementsERFIDApromotersignalingtranscriptionWRKY

Identifiers

PMID38294133
PMCPMC11016851
OpenAlexW4391387544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.