Evidence map›Paper›PMID 38293217›Full record

ArticlebioRxiv : the preprint server for biology2024

HSV-1 ICP0 Dimer Domain Adopts a Novel β-barrel Fold.

Erick McCloskey, Maithri Kashipathy, Anne Cooper, Philip Gao, David K Johnson, Kevin P Battaile, Scott Lovell, David J Davido

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Erick McCloskeyDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS, USA.ORCID 0000-0002-4918-1012
Maithri KashipathyProtein Structure and X-Ray Crystallography Laboratory, University of Kansas, Lawrence, KS, USA.ORCID 0000-0003-0435-989X
Anne CooperProtein Production Group, University of Kansas, Lawrence, KS, USA.ORCID 0000-0002-1893-4149
Philip GaoProtein Production Group, University of Kansas, Lawrence, KS, USA.ORCID 0000-0001-9741-9390
David K JohnsonChemical Computational Biology Core, University of Kansas, Lawrence, KS, USA.ORCID 0000-0003-4262-8173
Kevin P BattaileNYX, New York Structural Biology Center, Upton, NY 10027, USA.ORCID 0000-0003-0833-3259
Scott LovellProtein Structure and X-Ray Crystallography Laboratory, University of Kansas, Lawrence, KS, USA.ORCID 0000-0002-3215-4472
David J DavidoDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS, USA.ORCID 0000-0001-9102-083X
University of Kansas · USNew York Structural Biology Center · US

Funding

Synthetic Chemical Biology CoreP20GM113117 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OROZCO, ROBIN C. · 2016 to 2025
$23.9M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Graduate Training at the Biology-Chemistry InterfaceT32GM132061 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI Brian Douglas Ackley · 2020 to 2026
$2.9M
NIGMS NIH HHS P20 GM113117NIGMS NIH HHS P30 GM110761NIGMS NIH HHS T32 GM132061
6 · The paper itself

Abstract

Infected cell protein 0 (ICP0) is an immediate-early regulatory protein of herpes simplex virus 1 (HSV-1) that possesses E3 ubiquitin ligase activity. ICP0 transactivates viral genes, in part, through its C-terminal dimer domain (residues 555-767). Deletion of this dimer domain results in reduced viral gene expression, lytic infection, and reactivation from latency. Since ICP0's dimer domain is associated with its transactivation activity and efficient viral replication, we wanted to determine the structure of this specific domain. The C-terminus of ICP0 was purified from bacteria and analyzed by X-ray crystallography to solve its structure. Each subunit or monomer in the ICP0 dimer is composed of nine β-strands and two α-helices. Interestingly, two adjacent β-strands from one monomer "reach" into the adjacent subunit during dimer formation, generating two β-barrel-like structures. Additionally, crystallographic analyses indicate a tetramer structure is formed from two β-strands of each dimer, creating a "stacking" of the β-barrels. The structural protein database searches indicate the fold or structure adopted by the ICP0 dimer is novel. The dimer is held together by an extensive network of hydrogen bonds. Computational analyses reveal that ICP0 can either form a dimer or bind to SUMO1 via its C-terminal SUMO-interacting motifs but not both. Understanding the structure of the dimer domain will provide insights into the activities of ICP0 and, ultimately, the HSV-1 life cycle.

Indexed as

beta-barrelcrystal structuredimerizationHSV-1ICP0novel fold

Identifiers

PMID38293217
PMCPMC10827139
OpenAlexW4390928451

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.