Evidence map›Paper›PMID 38293216›Full record

ArticlebioRxiv : the preprint server for biology2024

Short-chain fatty acid metabolites propionate and butyrate are unique epigenetic regulatory elements linking diet, metabolism and gene expression.

Michael Nshanian, Joshua J Gruber, Benjamin S Geller, Faye Chleilat, Samuel Lancaster, Shannon M White, Ludmila Alexandrova, Jeannie Marie Camarillo, Neil L Kelleher, Yingming Zhao and 1 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Joshua J Gruber
Benjamin S Geller
Faye Chleilat
Samuel Lancaster
Shannon M White
Ludmila Alexandrova
Jeannie Marie CamarilloORCID 0000-0001-9699-0931
Yingming Zhao
Stanford University · USNorthwestern University · USStanford Medicine · USUniversity of Chicago · US

Funding

PRODUCTION CENTER FOR MAPPING REGULATORY REGIONS OF THE HUMAN GENOMEUM1HG009442 · NHGRI · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2017 to 2021
$20.1M
Metabolite sensing through the HAT1 acetyltransferase as an anti-cancer targetK08CA245024 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GRUBER, JOSHUA JAMES · 2020 to 2024
$820k
Ultra high throughput sequencer for sustaining and enhancing multi-scale genomic studiesS10OD025212 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2018 to 2018
$600k
NCI NIH HHS K08 CA245024NHGRI NIH HHS UM1 HG009442NIH HHS S10 OD025212
6 · The paper itself

Abstract

The short-chain fatty acids (SCFA) propionate and butyrate have beneficial health effects, are produced in large amounts by microbial metabolism and have been identified as unique acyl lysine histone marks. In order to better understand the function of these modifications we used ChIP-seq to map the genome-wide location of four short-chain acyl histone marks H3K18pr, H3K18bu, H4K12pr and H4K12bu in treated and untreated colorectal cancer (CRC) and normal cells, as well as in mouse intestines

Identifiers

PMID38293216
PMCPMC10827076
OpenAlexW4390859088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.