Evidence map›Paper›PMID 38293065›Full record

ArticlebioRxiv : the preprint server for biology2024

Binding profiles for 954 Drosophila and

Michelle Kudron, Louis Gevirtzman, Alec Victorsen, Bridget C Lear, Jiahao Gao, Jinrui Xu, Swapna Samanta, Emily Frink, Adri Tran-Pearson, Chau Huynh and 15 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Michelle KudronDepartment of Genetics, Yale University, New Haven, Connecticut 06520.
Louis GevirtzmanDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.
Alec VictorsenDepartment of Laboratory Medicine & Pathology, University of Minnesota, Minneapolis, MN 55455.
Bridget C LearDepartment of Neurobiology, Northwestern University, Evanston IL 60208.
Jiahao GaoProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520.
Jinrui XuDepartment of Biology, Howard University, Washington, District of Columbia 20059, USA.
Swapna SamantaDepartment of Genetics, Yale University, New Haven, Connecticut 06520.
Emily FrinkDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.
Adri Tran-PearsonDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.
Chau HuynhDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.
Dionne VafeadosDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.
Ann HammondsDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
William FisherDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Martha WallInstitute for Genomics and Systems Biology, Department of Human Genetics, University of Chicago, Illinois 60637.
Greg WesselingDepartment of Neurobiology, Northwestern University, Evanston IL 60208.
Vanessa HernandezDepartment of Neurobiology, Northwestern University, Evanston IL 60208.
Zhichun LinDepartment of Neurobiology, Northwestern University, Evanston IL 60208.
Mary KasparianDepartment of Neurobiology, Northwestern University, Evanston IL 60208.
Kevin WhiteDepartment of Biochemistry and Precision Medicine Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597.
Ravi AlladaDepartment of Neurobiology, Northwestern University, Evanston IL 60208.
Mark GersteinProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520.
LaDeana HillierDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.
Susan E CelnikerDivision of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Valerie ReinkeDepartment of Genetics, Yale University, New Haven, Connecticut 06520.ORCID 0000-0002-8967-2756
Robert H WaterstonDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195.

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Resource ProjectU41HG007355 · NHGRI · UNIVERSITY OF WASHINGTON · PI WATERSTON, ROBERT H · 2013 to 2021
$20.8M
Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Patterned Gene Expression in Drosophila DevelopmentR01GM076655 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI CELNIKER, SUSAN E · 2006 to 2020
$6.8M
Gene expression and regulation in C. elegans with single cell resolutionR01HG010478 · NHGRI · UNIVERSITY OF WASHINGTON · PI WATERSTON, ROBERT H · 2019 to 2021
$1.5M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
NCI NIH HHS P30 CA014599NHGRI NIH HHS R01 HG010478NHGRI NIH HHS U41 HG007355NIGMS NIH HHS R01 GM076655NIH HHS P40 OD010440NIH HHS P40 OD018537NIH HHS S10 OD030363
6 · The paper itself

Abstract

A catalog of transcription factor (TF) binding sites in the genome is critical for deciphering regulatory relationships. Here we present the culmination of the modERN (model organism Encyclopedia of Regulatory Networks) consortium that systematically assayed TF binding events in vivo in two major model organisms,

Identifiers

PMID38293065
PMCPMC10827215

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.