Evidence map›Paper›PMID 38293010›Full record

ArticlebioRxiv : the preprint server for biology2024

Comparative analysis of retroviral Gag-host cell interactions: focus on the nuclear interactome.

Gregory S Lambert, Breanna L Rice, Rebecca J Kaddis Maldonado, Jordan Chang, Leslie J Parent

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Gregory S LambertDepartment of Medicine, Penn State College of Medicine, 500 University Drive, Hershey, PA 17033, USA.ORCID 0000-0003-2808-4341
Breanna L RiceDepartment of Medicine, Penn State College of Medicine, 500 University Drive, Hershey, PA 17033, USA.ORCID 0000-0002-2528-6725
Rebecca J Kaddis MaldonadoDepartment of Medicine, Penn State College of Medicine, 500 University Drive, Hershey, PA 17033, USA.ORCID 0000-0003-0568-5224
Jordan ChangDepartment of Medicine, Penn State College of Medicine, 500 University Drive, Hershey, PA 17033, USA.ORCID 0000-0002-6475-5555
Leslie J ParentDepartment of Medicine, Penn State College of Medicine, 500 University Drive, Hershey, PA 17033, USA.ORCID 0000-0002-0431-9049
Pennsylvania State University · US

Funding

The Center for HIV RNA Studies (CRNA)P50GM103297 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SIMON, SANFORD M · 2012 to 2016
$21.7M
Nuclear Trafficking of the Retroviral Gag ProteinR01CA076534 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 1998 to 2018
$5.2M
VIRUSES AND CANCERT32CA060395 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MEYERS, CRAIG M · 1994 to 2021
$4.3M
Molecular Mechanisms of Retroviral Gag-RNA interactions in Virus AssemblyR01GM139392 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 2020 to 2023
$1.8M
Role of biomolecular condensates in regulating HIV-1 viral ribonucleoprotein complex formation in the setting of substance use disorderR33DA053689 · NIDA · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 2023 to 2025
$1.1M
Role of biomolecular condensates in regulating HIV-1 viral ribonucleoprotein complex formation in the setting of substance use disorderR21DA053689 · NIDA · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI PARENT, LESLIE J · 2021 to 2022
$360k
Interaction of Oncoretroviral Gag Protein with Host Nuclear FactorsF31CA196292 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI RICE, BREANNA LYNN · 2015 to 2017
$89k
NCI NIH HHS F31 CA196292NCI NIH HHS R01 CA076534NCI NIH HHS T32 CA060395NIDA NIH HHS R21 DA053689NIDA NIH HHS R33 DA053689NIGMS NIH HHS P50 GM103297NIGMS NIH HHS R01 GM139392
6 · The paper itself

Abstract

Retroviruses exploit a variety of host proteins to assemble and release virions from infected cells. To date, most studies that examined possible interacting partners of retroviral Gag proteins focused on host proteins that localize primarily to the cytoplasm or plasma membrane. Given the recent findings that several full-length Gag proteins localize to the nucleus, identifying the Gag-nuclear interactome has high potential for novel findings that reveal previously unknown host processes. In this study, we systematically compared nuclear factors identified in published HIV-1 proteomic studies which had used a variety of experimental approaches. In addition, to contribute to this body of knowledge, we report results from a mass spectrometry approach using affinity-tagged (His

Indexed as

HIV-1mass spectrometryproteomicsretrovirusesRous sarcoma virus

Identifiers

PMID38293010
PMCPMC10827203
OpenAlexW4391006410

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.