Evidence map›Paper›PMID 38291450›Full record

ArticleBMC veterinary research2024

Development of a fast and sensitive RT-qPCR assay based on SYBR® green for diagnostic and quantification of Avian Nephritis Virus (ANV) in chickens affected with enteric disease.

Anthony Loor-Giler, Sara Castillo-Reyes, Silvana Santander-Parra, Manuel Caza, Nikolaos C Kyriakidis, Antonio J Piantino Ferreira, Luis Nuñez

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Anthony Loor-GilerFacultad de Ingeniería y Ciencias Aplicadas, Carrera de Ingeniería en Biotecnología, Universidad de Las Américas (UDLA), Antigua Vía a Nayón S/N, Quito, EC, 170124, Ecuador.
Sara Castillo-ReyesFacultad de Ciencias de La Salud, de Las Américas (UDLA), Carrera de Medicina Veterinaria, UniversidadAntigua Vía a Nayón S/N, Quito, EC, 170124, Ecuador.
Silvana Santander-ParraFacultad de Ciencias de La Salud, de Las Américas (UDLA), Carrera de Medicina Veterinaria, UniversidadAntigua Vía a Nayón S/N, Quito, EC, 170124, Ecuador.
Manuel CazaFacultad de Ciencias de La Salud, de Las Américas (UDLA), Carrera de Medicina Veterinaria, UniversidadAntigua Vía a Nayón S/N, Quito, EC, 170124, Ecuador.
Nikolaos C KyriakidisFacultad de Medicina, Cancer Research Group, Universidad de Las Américas (UDLA), Quito, 170504, Ecuador.
Antonio J Piantino FerreiraDepartment of Pathology, School of Veterinary Medicine, University of Sao Paulo, Av. Prof. Dr. Orlando M. Paiva, 87, Sao Paulo, SP, 05508-270, Brazil.
Luis NuñezFacultad de Ciencias de La Salud, de Las Américas (UDLA), Carrera de Medicina Veterinaria, UniversidadAntigua Vía a Nayón S/N, Quito, EC, 170124, Ecuador. fabiann7@yahoo.es.
Universidad de Las Américas · ECUniversidade de São Paulo · BR

Funding

Universidad de Las Americas, Quito - Ecuador VET.LNN.19.02
6 · The paper itself

Abstract

backgroundEnteric viruses are among the most prominent etiological agents of Runting-Stunting Syndrome (RSS). The Avian Nephritis Virus (ANV) is an astrovirus associated with enteric diseases in poultry, whose early diagnosis is essential for maintaining a good poultry breeding environment. ANV is an RNA virus that rapidly mutates, except for some conserved regions such as ORF1b. Therefore, the approach of a diagnostic method based on fast-RT-qPCR using SYBR® Green that focuses on the amplification of a fragment of ORF1b is presented as a feasible alternative for the diagnosis of this viral agent. In this study, the proposed assay showed a standard curve with an efficiency of 103.8% and a LoD and LoQ of 1 gene viral copies. The assay was specific to amplify the ORF 1b gene, and no amplification was shown from other viral genomes or in the negative controls. 200 enteric (feces) samples from chickens (broilers) and laying hens with signs of RSS from Ecuadorian poultry flocks were examined to validate the proposed method.

resultsUsing our method, 164 positive results were obtained out of the total number of samples run, while the presence of viral RNA was detected in samples collected from one day to 44 weeks old in both avian lines.

conclusionsOur study presents a novel, rapid, robust, and sensitive molecular assay capable of detecting and quantifying even low copy numbers of the ANV in commercial birds, therefore introducing a handy tool in the early diagnosis of ANV in enteric disease outbreaks in poultry.

Indexed as

Astroviridae InfectionsAvastrovirusPoultry DiseasesRNA VirusesAnimalsChickensFemalePoultryRNA, ViralRNA, ViralANVdiagnosisEnteric virusesRT-qPCRSYBR Green

Identifiers

PMID38291450
PMCPMC10826264
OpenAlexW4391362241

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.