Evidence map›Paper›PMID 38290520›Full record

ArticleDevelopmental cell2024

PUF partner interactions at a conserved interface shape the RNA-binding landscape and cell fate in Caenorhabditis elegans.

Brian H Carrick, Sarah L Crittenden, Fan Chen, MaryGrace Linsley, Jennifer Woodworth, Peggy Kroll-Conner, Ahlan S Ferdous, Sündüz Keleş, Marvin Wickens, Judith Kimble

Open access · hybridAbstract read
In one paragraph

Article in Developmental cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

  1. RNA (New York, N.Y.) · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. A higher order PUF complex is central to regulation ofbioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Brian H CarrickDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: bcarrickresearch@gmail.com.
Sarah L CrittendenDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Fan ChenDepartment of Statistics, University of Wisconsin-Madison, Madison, WI 53706, USA.
MaryGrace LinsleyDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Jennifer WoodworthDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Peggy Kroll-ConnerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Ahlan S FerdousDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Sündüz KeleşDepartment of Statistics, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA.
Marvin WickensDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: wickens@biochem.wisc.edu.
Judith KimbleDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA. Electronic address: jekimble@wisc.edu.
University of Wisconsin–Madison · US

Funding

FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Statistical Methods for the Analysis of ChlP-chip DataR01HG003747 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2007 to 2024
$4.8M
Molecular regulation of germline developmentR01GM134119 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KIMBLE, JUDITH · 2019 to 2022
$2.2M
NHGRI NIH HHS R01 HG003747NIGMS NIH HHS R01 GM050942NIGMS NIH HHS R01 GM134119NIH HHS P40 OD010440NIH HHS R01 GM50942
6 · The paper itself

Abstract

Protein-RNA regulatory networks underpin much of biology. C. elegans FBF-2, a PUF-RNA-binding protein, binds over 1,000 RNAs to govern stem cells and differentiation. FBF-2 interacts with multiple protein partners via a key tyrosine, Y479. Here, we investigate the in vivo significance of partnerships using a Y479A mutant. Occupancy of the Y479A mutant protein increases or decreases at specific sites across the transcriptome, varying with RNAs. Germline development also changes in a specific fashion: Y479A abolishes one FBF-2 function-the sperm-to-oocyte cell fate switch. Y479A's effects on the regulation of one mRNA, gld-1, are critical to this fate change, though other network changes are also important. FBF-2 switches from repression to activation of gld-1 RNA, likely by distinct FBF-2 partnerships. The role of RNA-binding protein partnerships in governing RNA regulatory networks will likely extend broadly, as such partnerships pervade RNA controls in virtually all metazoan tissues and species.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsMaleRNARNA-Binding ProteinsSemenCaenorhabditis elegans ProteinsRNARNA-Binding ProteinsC. eleganseCLIPFBF-2FBF-binding elementsgermline stem cellsgld-1 RNAPUF/PUM partner proteinsPUF/PUM-RNA-binding proteinRNA binding landscapesperm/oocyte fate decision

Identifiers

PMID38290520
PMCPMC11253550
OpenAlexW4391312128

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.