Evidence map›Paper›PMID 38289057›Full record

ArticleMicrobiology resource announcements2024

The ATCC genome portal: 3,938 authenticated microbial reference genomes.

Scott V Nguyen, Nikhita P Puthuveetil, Joseph R Petrone, Jade L Kirkland, Kaitlyn Gaffney, Corina L Tabron, Noah Wax, James Duncan, Stephen King, Robert Marlow and 7 more

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Complete diploid genome of the type strain Yarrowia lipolytica YB-423 (ATCC 18942™).Journal of industrial microbiology & biotechnology · 2026
    Article
  4. Review
  5. Article
  6. UsePeerJ · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Scott V NguyenATCC, University Blvd, Manassas, Virginia, USA.ORCID 0000-0001-6498-2232
Nikhita P PuthuveetilATCC, University Blvd, Manassas, Virginia, USA.
Joseph R PetroneATCC, University Blvd, Manassas, Virginia, USA.
Jade L KirklandATCC, University Blvd, Manassas, Virginia, USA.
Kaitlyn GaffneyATCC, University Blvd, Manassas, Virginia, USA.
Corina L TabronATCC, University Blvd, Manassas, Virginia, USA.
Noah WaxATCC, University Blvd, Manassas, Virginia, USA.
James DuncanATCC, University Blvd, Manassas, Virginia, USA.
Stephen KingATCC, University Blvd, Manassas, Virginia, USA.
Robert MarlowATCC, University Blvd, Manassas, Virginia, USA.
Amy L ReeseATCC, University Blvd, Manassas, Virginia, USA.
David A YarmoshATCC, University Blvd, Manassas, Virginia, USA.
Hannah H McConnellATCC, University Blvd, Manassas, Virginia, USA.
Ana S FernandesATCC, University Blvd, Manassas, Virginia, USA.
John BagnoliATCC, University Blvd, Manassas, Virginia, USA.
Briana BentonATCC, University Blvd, Manassas, Virginia, USA.
Jonathan L JacobsATCC, University Blvd, Manassas, Virginia, USA.ORCID 0000-0001-5608-4256

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ATCC Genome Portal (AGP, https://genomes.atcc.org/) is a database of authenticated genomes for bacteria, fungi, protists, and viruses held in ATCC's biorepository. It now includes 3,938 assemblies (253% increase) produced under ISO 9000 by ATCC. Here, we present new features and content added to the AGP for the research community.

Indexed as

bacteriologybioinformaticscomputational biologydatabasegenomicsmicrobial genomicsmycologyprotistologyquality assurancevirology

Identifiers

PMID38289057
PMCPMC10868203

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.