Evidence map›Paper›PMID 38286831›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2024

Transcriptomic insights into shared responses to Fusarium crown rot infection and drought stresses in bread wheat (Triticum aestivum L.).

Zhouyang Su, Shang Gao, Zhi Zheng, Jiri Stiller, Shuwen Hu, Meredith Diane McNeil, Sergey Shabala, Meixue Zhou, Chunji Liu

Open access · hybridAbstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Zhouyang SuCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia.
Shang GaoCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia.
Zhi ZhengCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia.
Jiri StillerCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia.
Shuwen HuCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia.
Meredith Diane McNeilCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia.
Sergey ShabalaSchool of Biological Sciences, University of Western Australia, Crawley, WA, 6009, Australia.
Meixue ZhouTasmanian Institute of Agriculture, University of Tasmania, Prospect, TAS, 7250, Australia.
Chunji LiuCSIRO Agriculture and Food, St Lucia, QLD, 4067, Australia. chunji.liu@csiro.au.ORCID http://orcid.org/0000-0003-3399-7743
Commonwealth Scientific and Industrial Research Organisation · AUFoshan University · CNUniversity of Tasmania · AU

Funding

Commonwealth Scientific and Industrial Research Organisation R-10191
6 · The paper itself

Abstract

key messageShared changes in transcriptomes caused by Fusarium crown rot infection and drought stress were investigated based on a single pair of near-isogenic lines developed for a major locus conferring tolerance to both stresses. Fusarium crown rot (FCR) is a devastating disease in many areas of cereal production worldwide. It is well-known that drought stress enhances FCR severity but possible molecular relationship between these two stresses remains unclear. To investigate their relationships, we generated several pairs of near isogenic lines (NILs) targeting a locus conferring FCR resistance on chromosome 2D in bread wheat. One pair of these NILs showing significant differences between the two isolines for both FCR resistance and drought tolerance was used to investigate transcriptomic changes in responsive to these two stresses. Our results showed that the two isolines likely deployed different strategies in dealing with the stresses, and significant differences in expressed gene networks exist between the two time points of drought stresses evaluated in this study. Nevertheless, results from analysing Gene Ontology terms and transcription factors revealed that similar regulatory frameworks were activated in coping with these two stresses. Based on the position of the targeted locus, changes in expression following FCR infection and drought stresses, and the presence of non-synonymous variants between the two isolines, several candidate genes conferring resistance or tolerance to these two types of stresses were identified. The NILs generated, the large number of DEGs with single-nucleotide polymorphisms detected between the two isolines, and the candidate genes identified would be invaluable in fine mapping and cloning the gene(s) underlying the targeted locus.

Indexed as

FusariumTranscriptomeBreadDroughtsGene Expression ProfilingPlant DiseasesTriticum

Identifiers

PMID38286831
PMCPMC10824894
OpenAlexW4391324585

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.