Evidence map›Paper›PMID 38280869›Full record

ArticleNature communications2024

Reconstitution of human PDAC using primary cells reveals oncogenic transcriptomic features at tumor onset.

Yi Xu, Michael H Nipper, Angel A Dominguez, Zhenqing Ye, Naoki Akanuma, Kevin Lopez, Janice J Deng, Destiny Arenas, Ava Sanchez, Francis E Sharkey and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. metileneNature communications · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. International journal of molecular sciences · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Yi Xu *Department of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Michael H Nipper *Department of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Angel A DominguezDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0002-0558-0409
Zhenqing YeGreehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0009-0008-8336-0410
Naoki AkanumaDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0002-4165-1550
Kevin LopezDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Janice J DengDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0009-0006-6827-048X
Destiny ArenasDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Ava SanchezDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0009-0002-7138-3427
Francis E SharkeyDepartment of Pathology and Laboratory Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0002-7398-3285
Colin M CourtDivision of Surgical Oncology and Endocrine Surgery, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0002-9357-8957
Aatur D SinghiDepartment of Pathology, University of Pittsburgh Medical Center, Pittsburgh, PA, 15213, USA.
Huamin WangDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA.ORCID 0000-0002-2038-5863
Martin E Fernandez-ZapicoSchulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, MN, 55905, USA.ORCID 0000-0002-8089-3907
Lu-Zhe SunDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0001-7117-4559
Siyuan ZhengGreehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.ORCID 0000-0002-1031-9424
Yidong ChenGreehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Jun LiuDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA. Liuj8@uthscsa.edu.
Pei WangDepartment of Cell Systems & Anatomy, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA. wangp3@uthscsa.edu.ORCID 0000-0003-2373-7315
The University of Texas Health Science Center at San Antonio · USMayo Clinic · USThe University of Texas MD Anderson Cancer Center · USUniversity of Pittsburgh Medical Center · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
The RAS and P13K Pathways in Pancreatic AdenocarcinomaP01CA117969 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KALLURI, RAGHU · 2006 to 2025
$41.7M
Clinical Significance of Pancreatic Cancer Differentiation and DedifferentiationR01CA195651 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WANG, HUAMIN · 2015 to 2021
$1.8M
Mechanisms of pancreatic cancer initiation and progression from normal human pancreatic tissueR01CA237159 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WANG, PEI · 2020 to 2025
$1.7M
The Hippo signaling pathway in pancreatic epithelial cells orchestrate the inflammatory response R01R01DK110361 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WANG, PEI · 2017 to 2021
$1.7M
Science as a Team Sport: Leveling the playing field and setting the rules of engagement.T32GM148752 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI GRIFFITH, ANN VENABLES, OYAJOBI, BABATUNDE OLUKAYODE · 2023 to 2024
$874k
Illumina NovaSeq 6000 Sequencing SystemS10OD030311 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAI, ZHAO · 2021 to 2021
$600k
FACSAria Fusion cell sorter for Flow Cytometry Shared ResourceS10OD030432 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI BERTON, MICHAEL T · 2022 to 2022
$596k
Novel model to study PDAC using normal human pancreatic tissueR21CA218968 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WANG, PEI · 2017 to 2018
$365k
Identify tumor suppressor driver genes of pancreatic ductal adenocarcinomaR21CA245437 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI WANG, PEI · 2020 to 2021
$360k
NCI NIH HHS P01 CA117969NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA195651NCI NIH HHS R01 CA237159NCI NIH HHS R21 CA218968NCI NIH HHS R21 CA245437NIDDK NIH HHS R01 DK110361NIGMS NIH HHS T32 GM148752NIH HHS S10 OD030311NIH HHS S10 OD030432
6 · The paper itself

Abstract

Animal studies have demonstrated the ability of pancreatic acinar cells to transform into pancreatic ductal adenocarcinoma (PDAC). However, the tumorigenic potential of human pancreatic acinar cells remains under debate. To address this gap in knowledge, we expand sorted human acinar cells as 3D organoids and genetically modify them through introduction of common PDAC mutations. The acinar organoids undergo dramatic transcriptional alterations but maintain a recognizable DNA methylation signature. The transcriptomes of acinar organoids are similar to those of disease-specific cell populations. Oncogenic KRAS alone do not transform acinar organoids. However, acinar organoids can form PDAC in vivo after acquiring the four most common driver mutations of this disease. Similarly, sorted ductal cells carrying these genetic mutations can also form PDAC, thus experimentally proving that PDACs can originate from both human acinar and ductal cells. RNA-seq analysis reveal the transcriptional shift from normal acinar cells towards PDACs with enhanced proliferation, metabolic rewiring, down-regulation of MHC molecules, and alterations in the coagulation and complement cascade. By comparing PDAC-like cells with normal pancreas and PDAC samples, we identify a group of genes with elevated expression during early transformation which represent potential early diagnostic biomarkers.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsAcinar CellsAnimalsCarcinogenesisGene Expression ProfilingHumansProto-Oncogene Proteins p21(ras)TranscriptomeProto-Oncogene Proteins p21(ras)

Identifiers

PMID38280869
PMCPMC10821902
OpenAlexW4391276528

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.