Evidence map›Paper›PMID 38280010›Full record

ArticleCancer immunology, immunotherapy : CII2024

Characterization of T cell receptor repertoire in penile cancer.

Junying Zhang, Yapeng Wang, Yiqiang Huang, Xintao Tan, Jing Xu, Qian Yan, Jiao Tan, Yao Zhang, Jun Zhang, Qiang Ma and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cancer immunology, immunotherapy : CII, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Junying ZhangChongqing Key Laboratory of High Active Traditional Chinese Drug Delivery System, Chongqing Engineering Research Center of Pharmaceutical Sciences, Chongqing Medical and Pharmaceutical College, Chongqing, 401331, People's Republic of China.
Yapeng WangDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Yiqiang HuangDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Xintao TanDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Jing XuDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Qian YanDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Jiao TanSchool of Pharmacy, Chongqing Medical and Pharmaceutical College, Chongqing, 401331, People's Republic of China.
Yao ZhangDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Jun ZhangDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Qiang MaDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Hailin ZhuDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China.
Jin YeUrinary Nephropathy Center, The Thirteenth People's Hospital of Chongqing, Chongqing, 400053, People's Republic of China. 15808005558@163.com.
Zhaojing ZhuChongqing Key Laboratory of High Active Traditional Chinese Drug Delivery System, Chongqing Engineering Research Center of Pharmaceutical Sciences, Chongqing Medical and Pharmaceutical College, Chongqing, 401331, People's Republic of China. zhaojing6271@126.com.
Weihua LanDepartment of Urology, Daping Hospital, Army Medical University, Chongqing, 400042, People's Republic of China. doclan@yeah.net.
Daping Hospital · CNArmy Medical University · CNChongqing Medical and Pharmaceutical College · CNChongqing Medical University · CNThird People 's Hospital of Chongqing · CN

Funding

Complicated Family Reintegration in OEF-OIF VeteransI01HX000225 · VA · PHILADELPHIA VA MEDICAL CENTER · PI SAYERS, STEVEN L. · 2011 to 2015
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HSRD VA I01 HX000225
6 · The paper itself

Abstract

Tumor-infiltrating lymphocytes (TILs) play a key role in regulating the host immune response and shaping tumor microenvironment. It has been previously shown that T cell infiltration in penile tumors was associated with clinical outcomes. However, few studies have reported the T cell receptor (TCR) repertoire in patients with penile cancer. In the present study, we evaluated the TCR repertoires in tumor and adjacent normal tissues from 22 patients with penile squamous cell carcinoma (PSCC). Analysis of the T cell receptor beta-variable (TRBV) and joining (TRBJ) genes usage and analysis of complementarity determining region 3 (CDR3) length distribution did not show significant differences between tumor and matched normal tissues. Moreover, analysis of the median Jaccard index indicated a limited overlap of TCR repertoire between these groups. Compared with normal tissues, a significantly lower diversity and higher clonality of TCR repertoire was observed in tumor samples, which was associated with clinical characteristics. Further analysis of transcriptional profiles demonstrated that tumor samples with high clonality showed increased expression of genes associated with CD8 + T cells. In addition, we analyzed the TCR repertoire of CD4 + T cells and CD8 + T cells isolated from tumor tissues. We identified that expanded clonotypes were predominantly in the CD8 + T cell compartment, which presented with an exhausted phenotype. Overall, we comprehensively compared TCR repertoire between penile tumor and normal tissues and demonstrated the presence of distinct T cell immune microenvironments in patients with PSCC.

Indexed as

Carcinoma, Squamous CellPenile NeoplasmsCD8-Positive T-LymphocytesComplementarity Determining RegionsHumansMaleReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaTumor MicroenvironmentComplementarity Determining RegionsReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaHigh-throughput sequencingPenile cancerTCR clonalityTCR repertoireTumor microenvironment

Identifiers

PMID38280010
PMCPMC10822009
OpenAlexW4391278299

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.