Evidence map›Paper›PMID 38279958›Full record

ArticleACS synthetic biology2024

DNA Reaction System That Acquires Classical Conditioning.

Takashi Nakakuki, Masato Toyonari, Kaori Aso, Keiji Murayama, Hiroyuki Asanuma, Tom F A de Greef

Abstract read
In one paragraph

Article in ACS synthetic biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Takashi NakakukiDepartment of Intelligent and Control Systems, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology 680-4 Kawazu, Iizuka, Fukuoka 8208502, Japan.ORCID 0000-0003-0973-4177
Masato ToyonariDepartment of Intelligent and Control Systems, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology 680-4 Kawazu, Iizuka, Fukuoka 8208502, Japan.
Kaori AsoDepartment of Intelligent and Control Systems, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology 680-4 Kawazu, Iizuka, Fukuoka 8208502, Japan.
Keiji MurayamaDepartment of Biomolecular Engineering, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 4648603, Japan.ORCID 0000-0002-6537-0120
Hiroyuki AsanumaDepartment of Biomolecular Engineering, Graduate School of Engineering, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 4648603, Japan.ORCID 0000-0001-9903-7847
Tom F A de GreefLaboratory of Chemical Biology and Institute for Complex Molecular Systems and Computational Biology Group, Department of Biomedical Engineering, Eindhoven University of Technology, De Zaale, Eindhoven 5600 MB, The Netherlands.ORCID 0000-0002-9338-284X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biochemical reaction networks can exhibit plastic adaptation to alter their functions in response to environmental changes. This capability is derived from the structure and dynamics of the reaction networks and the functionality of the biomolecule. This plastic adaptation in biochemical reaction systems is essentially related to memory and learning capabilities, which have been studied in DNA computing applications for the past decade. However, designing DNA reaction systems with memory and learning capabilities using the dynamic properties of biochemical reactions remains challenging. In this study, we propose a basic DNA reaction system design that acquires classical conditioning, a phenomenon underlying memory and learning, as a typical learning task. Our design is based on a simple mechanism of five DNA strand displacement reactions and two degradative reactions. The proposed DNA circuit can acquire or lose a new function under specific conditions, depending on the input history formed by repetitive stimuli, by exploiting the dynamic properties of biochemical reactions induced by different input timings.

Indexed as

Conditioning, ClassicalDNADNAclassical conditioningDNA strand displacementforgettinglearningmemory

Identifiers

PMID38279958
PMCPMC10877613

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.