Evidence map›Paper›PMID 38279854›Full record

ArticleMolecular plant pathology2024

The type VI secretion system of Stenotrophomonas rhizophila CFBP13503 limits the transmission of Xanthomonas campestris pv. campestris 8004 from radish seeds to seedlings.

Tiffany Garin, Chrystelle Brin, Anne Préveaux, Agathe Brault, Martial Briand, Marie Simonin, Matthieu Barret, Laure Journet, Alain Sarniguet

Abstract read
In one paragraph

Article in Molecular plant pathology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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  6. Isolation and characterization ofFrontiers in plant science · 2025
    Article
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  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Tiffany GarinUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Chrystelle BrinUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Anne PréveauxUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Agathe BraultUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Martial BriandUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Marie SimoninUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Matthieu BarretUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.
Laure JournetLaboratoire d'Ingénierie des Systèmes Macromoléculaires, Institut de Microbiologie, Bioénergies et Biotechnologie, Institut de Microbiologie de la Méditerranée, Aix-Marseille Université-CNRS, UMR 7255, Marseille, France.
Alain SarniguetUniv Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France.ORCID 0000-0001-6232-0200

Funding

Conseil Régional des Pays de la LoireInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
6 · The paper itself

Abstract

Stenotrophomonas rhizophila CFBP13503 is a seedborne commensal bacterial strain, which is efficiently transmitted to seedlings and can outcompete the phytopathogenic bacterium Xanthomonas campestris pv. campestris (Xcc8004). The type VI secretion system (T6SS), an interference contact-dependent mechanism, is a critical component of interbacterial competition. The involvement of the T6SS of S. rhizophila CFBP13503 in the inhibition of Xcc8004 growth and seed-to-seedling transmission was assessed. The T6SS cluster of S. rhizophila CFBP13503 and nine putative effectors were identified. Deletion of two T6SS structural genes, hcp and tssB, abolished the competitive advantage of S. rhizophila against Xcc8004 in vitro. The population sizes of these two bacterial species were monitored in seedlings after inoculation of radish seeds with mixtures of Xcc8004 and either S. rhizophila wild-type (wt) strain or isogenic hcp mutant. A significant decrease in the population size of Xcc8004 was observed during confrontation with the S. rhizophila wt in comparison with T6SS-deletion mutants in germinated seeds and seedlings. We found that the T6SS distribution among 835 genomes of the Stenotrophomonas genus is scarce. In contrast, in all available S. rhizophila genomes, T6SS clusters are widespread and mainly belong to the T6SS group i4. In conclusion, the T6SS of S. rhizophila CFBP13503 is involved in the antibiosis against Xcc8004 and reduces seedling transmission of Xcc8004 in radish. The distribution of this T6SS cluster in the S. rhizophila complex could make it possible to exploit these strains as biocontrol agents against X. campestris pv. campestris.

Indexed as

RaphanusType VI Secretion SystemsXanthomonas campestrisBacterial ProteinsSeedlingsSeedsStenotrophomonasBacterial ProteinsType VI Secretion Systemsinterbacterial competitionseedseedling transmissionStenotrophomas rhizophilatype VI secretion systemXanthomonas campestris pv. campestris

Identifiers

PMID38279854
PMCPMC10777753

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.