Evidence map›Paper›PMID 38279651›Full record

ArticleBriefings in bioinformatics2024

Recognition of rare antinuclear antibody patterns based on a novel attention-based enhancement framework.

Junxiang Zeng, Xiupan Gao, Limei Gao, Youyou Yu, Lisong Shen, Xiujun Pan

Registry-linked trialAbstract read
In one paragraph

Article in Briefings in bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06542783 (Evaluating the Realism of ANA HEp-2 Cell Images Synthesized Using Latent Diffusion Models), which is not on this map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06542783 unknown statusnot on this map

Evaluating the Realism of ANA HEp-2 Cell Images Synthesized Using Latent Diffusion Models: A Multi-center Visual Turing Test

Typeobservational_patient_registrySponsorXinhua Hospital, Shanghai Jiao Tong University School of MedicineRan2024 to 2026Enrolled300ConditionsAnti-nuclear Antibody, Visual Turing Tests, Artifical IntelligenceArmsreferring to the results of AI model output
3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Junxiang ZengDepartment of Clinical Laboratory, Xinhua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Xiupan GaoDepartment of Clinical Laboratory, Xinhua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Limei GaoDepartment of Immunology and Rheumatology, Xinhua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Youyou YuDepartment of Clinical Laboratory, Xinhua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Lisong ShenDepartment of Clinical Laboratory, Xinhua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Xiujun PanDepartment of Clinical Laboratory, Xinhua Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.ORCID 0009-0001-0344-3574

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rare antinuclear antibody (ANA) pattern recognition has been a widely applied technology for routine ANA screening in clinical laboratories. In recent years, the application of deep learning methods in recognizing ANA patterns has witnessed remarkable advancements. However, the majority of studies in this field have primarily focused on the classification of the most common ANA patterns, while another subset has concentrated on the detection of mitotic metaphase cells. To date, no prior research has been specifically dedicated to the identification of rare ANA patterns. In the present paper, we introduce a novel attention-based enhancement framework, which was designed for the recognition of rare ANA patterns in ANA-indirect immunofluorescence images. More specifically, we selected the algorithm with the best performance as our target detection network by conducting comparative experiments. We then further developed and enhanced the chosen algorithm through a series of optimizations. Then, attention mechanism was introduced to facilitate neural networks in expediting the learning process, extracting more essential and distinctive features for the target features that belong to the specific patterns. The proposed approach has helped to obtained high precision rate of 86.40%, 82.75% recall, 84.24% F1 score and 84.64% mean average precision for a 9-category rare ANA pattern detection task on our dataset. Finally, we evaluated the potential of the model as medical technologist assistant and observed that the technologist's performance improved after referring to the results of the model prediction. These promising results highlighted its potential as an efficient and reliable tool to assist medical technologists in their clinical practice.

Indexed as

AlgorithmsAntibodies, AntinuclearFluorescent Antibody Technique, IndirectAntibodies, Antinuclearantinuclear antibodiesartificial intelligenceattention mechanismdeep learningindirect immunofluorescence

Identifiers

PMID38279651
PMCPMC10818137

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.