Evidence map›Paper›PMID 38278992›Full record

ArticleMolecular psychiatry2024

Brain and blood transcriptome profiles delineate common genetic pathways across suicidal ideation and suicide.

Shengnan Sun, Qingkun Liu, Zhaoyu Wang, Yung-Yu Huang, M Elizabeth Sublette, Andrew J Dwork, Gorazd Rosoklija, Yongchao Ge, Hanga Galfalvy, J John Mann and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 3 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 3 syntheses or guidelines pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Shengnan SunDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID 0000-0002-6962-583X
Qingkun LiuDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Zhaoyu WangDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Yung-Yu HuangDepartment of Psychiatry, Columbia University, New York, NY, 10032, USA.
M Elizabeth SubletteDepartment of Psychiatry, Columbia University, New York, NY, 10032, USA.ORCID 0000-0001-7378-4262
Andrew J DworkDepartment of Psychiatry, Columbia University, New York, NY, 10032, USA.
Gorazd RosoklijaDepartment of Psychiatry, Columbia University, New York, NY, 10032, USA.
Yongchao GeDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Hanga GalfalvyJames J. Peters VA Medical Center, Bronx, NY, 10468, USA.ORCID 0000-0001-7156-6106
J John MannDepartment of Psychiatry, Columbia University, New York, NY, 10032, USA.
Fatemeh HaghighiDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. fatemeh.haghighi@mssm.edu.ORCID 0000-0003-0920-6956
James J. Peters VA Medical Center · USNew York Psychoanalytic Society and Institute · USIcahn School of Medicine at Mount Sinai · US

Funding

Suicidal Behavior: Aggression Subtypes, Childhood Adversity and Stress ResponseP50MH090964 · NIMH · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI MANN, JOSEPH JOHN · 2013 to 2022
$23.6M
Building Schizophrenia Research in MacedoniaR01MH098786 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DWORK, ANDREW J, ROSOKLIJA, GORAZD B. · 2012 to 2016
$2.2M
Identifying Bio-signatures of Suicidal Subtypes in VeteransI01CX001728 · VA · JAMES J PETERS VA MEDICAL CENTER · PI HAGHIGHI, FATEMEH G · 2019 to 2023
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Neuroinflammatory and Epigenetic Mechanisms of Blood-Brain Barrier Compromise in SuicideI01BX003794 · VA · JAMES J PETERS VA MEDICAL CENTER · PI HAGHIGHI, FATEMEH G · 2018 to 2024
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CSR&D Research Career Scientist Award ApplicationIK6CX002074 · VA · JAMES J PETERS VA MEDICAL CENTER · PI HAGHIGHI, FATEMEH G · 2020 to 2025
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Identifying DNA Methylation Alterations of Chronic Effects Of Blast and Disturbed SleepI01RX003818 · VA · JAMES J PETERS VA MEDICAL CENTER · PI FATEMEH G HAGHIGHI · 2022 to 2026
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DNA Methylation and Inflammatory Signatures Associated with Suicide Risk and Treatment in US VeteransI01CX001395 · VA · JAMES J PETERS VA MEDICAL CENTER · PI HAGHIGHI, FATEMEH G · 2017 to 2023
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BLRD VA I01 BX003794BLRD VA I01 BX006069CSRD VA I01 CX001395CSRD VA I01 CX001728CSRD VA IK6 CX002074NIMH NIH HHS P50 MH090964NIMH NIH HHS R01 MH098786RRD VA I01 RX003818U.S. Department of Veterans Affairs (Department of Veterans Affairs) BX003794U.S. Department of Veterans Affairs (Department of Veterans Affairs) CX001395U.S. Department of Veterans Affairs (Department of Veterans Affairs) CX001728U.S. Department of Veterans Affairs (Department of Veterans Affairs) CX002074U.S. Department of Veterans Affairs (Department of Veterans Affairs) RX003818
6 · The paper itself

Abstract

Human genetic studies indicate that suicidal ideation and behavior are both heritable. Most studies have examined associations between aberrant gene expression and suicide behavior, but behavior risk is linked to the severity of suicidal ideation. Through a gene network approach, this study investigates how gene co-expression patterns are associated with suicidal ideation and severity using RNA-seq data in peripheral blood from 46 live participants with elevated suicidal ideation and 46 with no ideation. Associations with the presence of suicidal ideation were found within 18 co-expressed modules (p < 0.05), as well as in 3 co-expressed modules associated with suicidal ideation severity (p < 0.05, not explained by severity of depression). Suicidal ideation presence and severity-related gene modules with enrichment of genes involved in defense against microbial infection, inflammation, and adaptive immune response were identified and investigated using RNA-seq data from postmortem brain that revealed gene expression differences with moderate effect sizes in suicide decedents vs. non-suicides in white matter, but not gray matter. Findings support a role of brain and peripheral blood inflammation in suicide risk, showing that suicidal ideation presence and severity are associated with an inflammatory signature detectable in blood and brain, indicating a biological continuity between ideation and suicidal behavior that may underlie a common heritability.

Indexed as

BrainSuicidal IdeationSuicideTranscriptomeAdultDepressionFemaleGene Regulatory NetworksHumansInflammationMaleMiddle Aged

Identifiers

PMID38278992
PMCPMC11189724
OpenAlexW4391260564

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.