Evidence map›Paper›PMID 38278977›Full record

ArticleBritish journal of cancer2024

Urinary microbiome-based metagenomic signature for the noninvasive diagnosis of hepatocellular carcinoma.

Eun Ju Cho, Boram Kim, Su Jong Yu, Suk Kyun Hong, YoungRok Choi, Nam-Joon Yi, Kwang-Woong Lee, Kyung-Suk Suh, Jung-Hwan Yoon, Taesung Park

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 2 countries.

Eun Ju Cho *Department of Internal Medicine and Liver Research Institute, Seoul National University College of Medicine, Seoul, 03080, Korea.ORCID 0000-0002-2677-3189
Boram Kim *Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 08826, Korea.
Su Jong YuDepartment of Internal Medicine and Liver Research Institute, Seoul National University College of Medicine, Seoul, 03080, Korea.
Suk Kyun HongDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Korea.
YoungRok ChoiDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Korea.
Nam-Joon YiDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Korea.
Kwang-Woong LeeDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Korea.
Kyung-Suk SuhDepartment of Surgery, Seoul National University College of Medicine, Seoul, 03080, Korea.
Jung-Hwan YoonDepartment of Internal Medicine and Liver Research Institute, Seoul National University College of Medicine, Seoul, 03080, Korea. yoonjh@snu.ac.kr.ORCID 0000-0002-9128-3610
Taesung ParkDepartment of Statistics, Seoul National University, Seoul, 08826, Korea. tspark@stats.snu.ac.kr.
Seoul National University · KR

Funding

Ministry of Health and Welfare (Ministry of Health, Welfare and Family Affairs) HI16C2037National Research Foundation of Korea (NRF) NRF-2020R1C1C1012749Seoul National University Hospital (SNUH) 05-2021-0010
6 · The paper itself

Abstract

backgroundGut microbial dysbiosis is implicated in chronic liver disease and hepatocellular carcinoma (HCC), but the role of microbiomes from various body sites remains unexplored. We assessed disease-specific alterations in the urinary microbiome in HCC patients, investigating their potential as diagnostic biomarkers.

methodsWe performed cross-sectional analyses of urine samples from 471 HCC patients and 397 healthy controls and validated the results in an independent cohort of 164 HCC patients and 164 healthy controls. Urinary microbiomes were analyzed by 16S rRNA gene sequencing. A microbial marker-based model distinguishing HCC from controls was built based on logistic regression, and its performance was tested.

resultsMicrobial diversity was significantly reduced in the HCC patients compared with the controls. There were significant differences in the abundances of various bacteria correlated with HCC, thus defining a urinary microbiome-derived signature of HCC. We developed nine HCC-associated genera-based models with robust diagnostic accuracy (area under the curve [AUC], 0.89; balanced accuracy, 81.2%). In the validation, this model detected HCC with an AUC of 0.94 and an accuracy of 88.4%.

conclusionsThe urinary microbiome might be a potential biomarker for the detection of HCC. Further clinical testing and validation of these results are needed in prospective studies.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsMicrobiotaCross-Sectional StudiesHumansProspective StudiesRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID38278977
PMCPMC10951239
OpenAlexW4391256221

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.