Evidence map›Paper›PMID 38278954›Full record

ArticleNature plants2024

Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.

Xiao Ma, Steffen Vanneste, Jiyang Chang, Luca Ambrosino, Kerrie Barry, Till Bayer, Alexander A Bobrov, LoriBeth Boston, Justin E Campbell, Hengchi Chen and 28 more

Abstract read
In one paragraph

Article in Nature plants, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
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  4. Ecological opportunity and the onset of polyploid niche expansion waves.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Genome-Wide Identification, Expression Analysis ofPlants (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Xiao Ma *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-4787-9318
Steffen Vanneste *Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium.
Jiyang Chang *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-3646-2878
Luca AmbrosinoDepartment of Research Infrastructure for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Naples, Italy.ORCID http://orcid.org/0000-0003-1756-9538
Kerrie BarryDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8999-6785
Till BayerMarine Evolutionary Ecology, GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Kiel, Germany.ORCID http://orcid.org/0000-0002-4704-2449
Alexander A BobrovPapanin Institute for Biology of Inland Waters RAS, Borok, Russia.ORCID http://orcid.org/0000-0002-9819-5111
LoriBeth BostonGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Justin E CampbellCoastlines and Oceans Division, Institute of Environment, Florida International University-Biscayne Bay Campus, Miami, FL, USA.
Hengchi ChenDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0003-1173-6622
Maria Luisa ChiusanoDepartment of Research Infrastructure for Marine Biological Resources, Stazione Zoologica Anton Dohrn, Naples, Italy.
Emanuela DattoloDepartment of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy.
Jane GrimwoodGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-8356-8325
Guifen HeDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Jerry JenkinsGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-7943-3997
Marina KhachaturyanMarine Evolutionary Ecology, GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Kiel, Germany.ORCID http://orcid.org/0000-0003-4495-6461
Lázaro Marín-GuiraoDepartment of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy.ORCID http://orcid.org/0000-0001-6240-8018
Attila MesterházyCentre for Ecological Research, Wetland Ecology Research Group, Debrecen, Hungary.
Danish-Daniel MuhdInstitute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia.ORCID http://orcid.org/0000-0001-9438-0128
Jessica PazzagliaDepartment of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy.ORCID http://orcid.org/0000-0002-8677-7712
Chris PlottGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.ORCID http://orcid.org/0000-0002-0109-5174
Shanmugam RajasekarArizona Genomics Institute, University of Arizona, Tucson, AZ, USA.
Stephane RombautsDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Miriam RuoccoDepartment of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy.ORCID http://orcid.org/0000-0002-3779-8373
Alison ScottDepartment of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Köln, Germany.ORCID http://orcid.org/0000-0002-4508-2973
Min Pau TanInstitute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia.ORCID http://orcid.org/0000-0003-0149-5247
Jozefien Van de VeldeDepartment of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Köln, Germany.ORCID http://orcid.org/0000-0003-4968-2607
Bartel VanholmeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
Jenell WebberGenome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.
Li Lian WongInstitute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia.
Mi YanDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Yeong Yik SungInstitute of Climate Adaptation and Marine Biotechnology, Universiti Malaysia Terengganu, Terengganu, Malaysia.ORCID http://orcid.org/0000-0001-5897-9037
Polina NovikovaDepartment of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Köln, Germany.ORCID http://orcid.org/0000-0002-4552-4575
Jeremy SchmutzDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8062-9172
Thorsten B H ReuschMarine Evolutionary Ecology, GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Kiel, Germany. treusch@geomar.de.ORCID http://orcid.org/0000-0002-8961-4337
Gabriele ProcacciniDepartment of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Naples, Italy. gpro@szn.it.ORCID http://orcid.org/0000-0002-6179-468X
Jeanine L OlsenGroningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, the Netherlands. j.l.olsen@rug.nl.ORCID http://orcid.org/0000-0003-3091-0163
Yves Van de PeerDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. yves.vandepeer@psb.ugent.be.ORCID http://orcid.org/0000-0003-4327-3730

Funding

European Research Council 833522
6 · The paper itself

Abstract

We present chromosome-level genome assemblies from representative species of three independently evolved seagrass lineages: Posidonia oceanica, Cymodocea nodosa, Thalassia testudinum and Zostera marina. We also include a draft genome of Potamogeton acutifolius, belonging to a freshwater sister lineage to Zosteraceae. All seagrass species share an ancient whole-genome triplication, while additional whole-genome duplications were uncovered for C. nodosa, Z. marina and P. acutifolius. Comparative analysis of selected gene families suggests that the transition from submerged-freshwater to submerged-marine environments mainly involved fine-tuning of multiple processes (such as osmoregulation, salinity, light capture, carbon acquisition and temperature) that all had to happen in parallel, probably explaining why adaptation to a marine lifestyle has been exceedingly rare. Major gene losses related to stomata, volatiles, defence and lignification are probably a consequence of the return to the sea rather than the cause of it. These new genomes will accelerate functional studies and solutions, as continuing losses of the 'savannahs of the sea' are of major concern in times of climate change and loss of biodiversity.

Indexed as

AlismatalesZosteraceaeEcosystem

Identifiers

PMID38278954
PMCPMC7615686

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