Evidence map›Paper›PMID 38278794›Full record

ArticleNature communications2024

Identification of differentially recognized T cell epitopes in the spectrum of tuberculosis infection.

Sudhasini Panda, Jeffrey Morgan, Catherine Cheng, Mayuko Saito, Robert H Gilman, Nelly Ciobanu, Valeriu Crudu, Donald G Catanzaro, Antonino Catanzaro, Timothy Rodwell and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 32 citations in OpenAlex.

  1. Enrichment of CD4iScience · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Immunodominant Tuberculosis Antigens Recognized by Human CD4Cold Spring Harbor perspectives in medicine · 2026
    Article
  6. Review
  7. Article
  8. Gene conversion is a key driver of diversity hotspots inbioRxiv : the preprint server for biology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. RNA vaccines: The dawn of a new age for tuberculosis?Human vaccines & immunotherapeutics · 2025
    Review
  17. Article
  18. Enrichment of a CD4bioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 5 countries.

Sudhasini PandaCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0003-3680-3967
Jeffrey MorganCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0003-0455-7175
Catherine ChengCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0009-0007-5949-2205
Mayuko SaitoDepartment of Virology, Tohoku University Graduate School of Medicine, Sendai, Japan.
Robert H GilmanJohns Hopkins School of Public Health, Baltimore, MD, USA.
Nelly CiobanuPhthisiopneumology Institute, Chisinau, Republic of Moldova.
Valeriu CruduPhthisiopneumology Institute, Chisinau, Republic of Moldova.ORCID 0000-0001-5059-8002
Donald G CatanzaroDepartment of Biological Sciences, University of Arkansas, Fayetteville, AR, USA.ORCID 0000-0003-1760-0574
Antonino CatanzaroDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.
Timothy RodwellDepartment of Medicine, University of California San Diego, La Jolla, CA, USA.
Judy S B PereraFaculty of Medicine, General Sir John Kotelawala Defense University, Ratmalana, Sri Lanka.
Teshan ChathurangaFaculty of Medicine, General Sir John Kotelawala Defense University, Ratmalana, Sri Lanka.
Bandu GunasenaNational Hospital for Respiratory Diseases, Welisara, Sri Lanka.
Aruna D DeSilvaCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.
Bjoern PetersCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-8457-6693
Alessandro Sette *Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0001-7013-2250
Cecilia S Lindestam Arlehamn *Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA. cecilia@lji.org.ORCID 0000-0001-7302-8002
La Jolla Institute for Immunology · USGeneral Sir John Kotelawala Defence University · LKPhthisiopneumology Institute "Chiril Draganiuc" · MDUniversity of California San Diego · USJohns Hopkins University · USNational Hospital of Sri Lanka · LKTohoku University · JPUniversity of Arkansas at Fayetteville · US

Funding

Large Scale T Cell Epitope Discovery: Proteome-wide characterization of T cell epitopes from Mycobacterium tuberculosis in vaccination and active infection75N93019C00067 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI PETERS, BJOERN · 2019 to 2023
$4.5M
Identifying individuals at risk of progression to active tuberculosisR01AI137681 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CATANZARO, ANTONINO, RODWELL, TIMOTHY CHARLES · 2018 to 2022
$3.7M
NIAID NIH HHS 75N93019C00067NIAID NIH HHS HHSN272200900044CNIAID NIH HHS R01 AI137681
6 · The paper itself

Abstract

There is still incomplete knowledge of which Mycobacterium tuberculosis (Mtb) antigens can trigger distinct T cell responses at different stages of infection. Here, a proteome-wide screen of 20,610 Mtb-derived peptides in 21 patients mid-treatment for active tuberculosis (ATB) reveals IFNγ-specific T cell responses against 137 unique epitopes. Of these, 16% are recognized by two or more participants and predominantly derived from cell wall and cell processes antigens. There is differential recognition of antigens, including TB vaccine candidate antigens, between ATB participants and interferon-gamma release assay (IGRA + /-) individuals. We developed an ATB-specific peptide pool (ATB116) consisting of epitopes exclusively recognized by ATB participants. This pool can distinguish patients with pulmonary ATB from IGRA + /- individuals from various geographical locations, with a sensitivity of over 60% and a specificity exceeding 80%. This proteome-wide screen of T cell reactivity identified infection stage-specific epitopes and antigens for potential use in diagnostics and measuring Mtb-specific immune responses.

Indexed as

Latent TuberculosisMycobacterium tuberculosisTuberculosisAntigens, BacterialEpitopes, T-LymphocyteHumansInterferon-gammaPeptidesProteomeAntigens, BacterialEpitopes, T-LymphocyteInterferon-gammaPeptidesProteome

Identifiers

PMID38278794
PMCPMC10817963
OpenAlexW4391259695

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.