Evidence map›Paper›PMID 38277374›Full record

ArticlePloS one2024

Phylogenomic curation of Ovate Family Proteins (OFPs) in the U's Triangle of Brassica L. indicates stress-induced growth modulation.

Muhammad Shahzaib, Uzair Muhammad Khan, Muhammad Tehseen Azhar, Rana Muhammad Atif, Sultan Habibullah Khan, Qamar U Zaman, Iqrar Ahmad Rana

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Muhammad ShahzaibCentre of Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad, Faisalabad, Punjab, Pakistan.
Uzair Muhammad KhanCentre for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad, Faisalabad, Punjab, Pakistan.
Muhammad Tehseen AzharDepartment of Plant Breeding and Genetics, University of Agriculture, Faisalabad, Faisalabad, Punjab, Pakistan.
Rana Muhammad AtifCentre for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad, Faisalabad, Punjab, Pakistan.
Sultan Habibullah KhanCentre of Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad, Faisalabad, Punjab, Pakistan.
Qamar U ZamanHainan Yazhou Bay Seed Laboratory, Sanya Nanfan Research Institute of Hainan University, Sanya, China.
Iqrar Ahmad RanaCentre of Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad, Faisalabad, Punjab, Pakistan.ORCID 0000-0002-9726-8155
University of Faisalabad · PKHainan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ovate Family Proteins (OFPs) gene family houses a class of proteins that are involved in regulating plant growth and development. To date, there is no report of the simultaneous functional characterization of this gene family in all members of U's Triangle of Brassica. Here, we retrieved a combined total of 256 OFP protein sequences and analyzed their chromosomal localization, gene structure, conserved protein motif domains, and the pattern of cis-acting regulatory elements. The abundance of light-responsive elements like G-box, MRE, and GT1 motif suggests that OFPs are sensitive to the stimuli of light. The protein-protein interaction network analysis revealed that OFP05 and its orthologous genes were involved in regulating the process of transcriptional repression through their interaction with homeodomain transcription factors like KNAT and BLH. The presence of domains like DNA binding 2 and its superfamily speculated the involvement of OFPs in regulating gene expression. The biotic and abiotic stress, and the tissue-specific expression analysis of the RNA-seq datasets revealed that some of the genes such as BjuOFP30, and BnaOFP27, BolOFP11, and BolOFP10 were highly upregulated in seed coat at the mature stage and roots under various chemical stress conditions respectively which suggests their crucial role in plant growth and development processes. Experimental validation of prominent BnaOFPs such as BnaOFP27 confirmed their involvement in regulating gene expression under salinity, heavy metal, drought, heat, and cold stress. The GO and KEGG pathway enrichment analysis also sheds light on the involvement of OFPs in regulating plant growth and development. These findings have the potential to serve as a forerunner for future studies in terms of functionally diverse analysis of the OFP gene family in Brassica and other plant species.

Indexed as

BrassicaGene Expression Regulation, PlantGenome, PlantMultigene FamilyPhylogenyPlant ProteinsProtein Interaction MapsStress, PhysiologicalTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID38277374
PMCPMC10817133
OpenAlexW4391250739

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.