Evidence map›Paper›PMID 38275957›Full record

ArticleViruses2024

Evolutionary-Related High- and Low-Virulent Classical Swine Fever Virus Isolates Reveal Viral Determinants of Virulence.

Yoandry Hinojosa, Matthias Liniger, Obdulio García-Nicolás, Markus Gerber, Anojen Rajaratnam, Sara Muñoz-González, Liani Coronado, María Teresa Frías, Carmen Laura Perera, Llilianne Ganges and 1 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 4 countries.

Yoandry HinojosaDivision of Virology, Institute of Virology and Immunology IVI, 3147 Mittelhäusern, Switzerland.ORCID 0000-0002-2407-697X
Matthias LinigerDivision of Virology, Institute of Virology and Immunology IVI, 3147 Mittelhäusern, Switzerland.ORCID 0000-0002-7160-3760
Obdulio García-NicolásDivision of Virology, Institute of Virology and Immunology IVI, 3147 Mittelhäusern, Switzerland.ORCID 0000-0001-8922-5449
Markus GerberDivision of Virology, Institute of Virology and Immunology IVI, 3147 Mittelhäusern, Switzerland.
Anojen RajaratnamDivision of Virology, Institute of Virology and Immunology IVI, 3147 Mittelhäusern, Switzerland.
Sara Muñoz-GonzálezWOAH Reference Laboratory for Classical Swine Fever, IRTA-CReSA, 08193 Barcelona, Spain.ORCID 0000-0002-7846-7001
Liani CoronadoWOAH Reference Laboratory for Classical Swine Fever, IRTA-CReSA, 08193 Barcelona, Spain.ORCID 0000-0003-4278-0589
María Teresa FríasCentro Nacional de Sanidad Agropecuaria (CENSA), San José de las Lajas 32700, Cuba.
Carmen Laura PereraCentro Nacional de Sanidad Agropecuaria (CENSA), San José de las Lajas 32700, Cuba.
Llilianne GangesWOAH Reference Laboratory for Classical Swine Fever, IRTA-CReSA, 08193 Barcelona, Spain.ORCID 0000-0002-8644-3560
Nicolas RuggliDivision of Virology, Institute of Virology and Immunology IVI, 3147 Mittelhäusern, Switzerland.ORCID 0000-0002-7679-6290
University of Bern · CHCentre de Recerca en Sanitat Animal · ESCentro Nacional de Sanidad Agropecuaria · CU

Funding

Swiss National Science Foundation 310030-141045
6 · The paper itself

Abstract

Classical swine fever (CSF) has been eradicated from Western and Central Europe but remains endemic in parts of Central and South America, Asia, and the Caribbean. CSF virus (CSFV) has been endemic in Cuba since 1993, most likely following an escape of the highly virulent Margarita/1958 strain. In recent years, chronic and persistent infections with low-virulent CSFV have been observed. Amino acid substitutions located in immunodominant epitopes of the envelope glycoprotein E2 of the attenuated isolates were attributed to positive selection due to suboptimal vaccination and control. To obtain a complete picture of the mutations involved in attenuation, we applied forward and reverse genetics using the evolutionary-related low-virulent CSFV/Pinar del Rio (CSF1058)/2010 (PdR) and highly virulent Margarita/1958 isolates. Sequence comparison of the two viruses recovered from experimental infections in pigs revealed 40 amino acid differences. Interestingly, the amino acid substitutions clustered in E2 and the NS5A and NS5B proteins. A long poly-uridine sequence was identified previously in the 3' untranslated region (UTR) of PdR. We constructed functional cDNA clones of the PdR and Margarita strains and generated eight recombinant viruses by introducing single or multiple gene fragments from Margarita into the PdR backbone. All chimeric viruses had comparable replication characteristics in porcine monocyte-derived macrophages. Recombinant PdR viruses carrying either E2 or NS5A/NS5B of Margarita, with 36 or 5 uridines in the 3'UTR, remained low virulent in 3-month-old pigs. The combination of these elements recovered the high-virulent Margarita phenotype. These results show that CSFV evolution towards attenuated variants in the field involved mutations in both structural and non-structural proteins and the UTRs, which act synergistically to determine virulence.

Indexed as

Classical Swine FeverClassical Swine Fever VirusAnimalsMutationSwineViral Envelope ProteinsVirulenceViral Envelope ProteinsCSFVE2NS5ANS5Bpathogenicityreverse geneticssubgenotype 1.4virulence

Identifiers

PMID38275957
PMCPMC10820463
OpenAlexW4391030585

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.