Evidence map›Paper›PMID 38273342›Full record

ArticleMicrobial cell factories2024

Identification of squalene epoxidase in triterpenes biosynthesis in Poria cocos by molecular docking and CRISPR-Cas9 gene editing.

Xiao-Liu Liu, Jing Xie, Zhen-Ni Xie, Can Zhong, Hao Liu, Shui-Han Zhang, Jian Jin

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xiao-Liu LiuInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China.
Jing XieInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China.
Zhen-Ni XieInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China.
Can ZhongInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China.
Hao LiuInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China. cnliuhao@outlook.com.
Shui-Han ZhangInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China.
Jian JinInstitute of Chinese Medicine Resources, Hunan Academy of Chinese Medicine, Changsha, 410013, China. jinjian2016@163.com.
Hunan Academy of Traditional Chinese Medicine · CNHunan University of Traditional Chinese Medicine · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSqualene epoxidase is one of the rate-limiting enzymes in the biosynthetic pathway of membrane sterols and triterpenoids. The enzyme catalyzes the formation of oxidized squalene, which is a common precursor of sterols and triterpenoids.

resultIn this study, the squalene epoxidase gene (PcSE) was evaluated in Poria cocos. Molecular docking between PcSE and squalene was performed and the active amino acids were identified. The sgRNA were designed based on the active site residues. The effect on triterpene synthesis in P. cocos was consistent with the results from ultra-high-performance liquid chromatography-quadruplex time-of-flight-double mass spectrometry (UHPLC-QTOF-MS/MS) analysis. The results showed that deletion of PcSE inhibited triterpene synthesis. In vivo verification of PcSE function was performed using a PEG-mediated protoplast transformation approach.

conclusionThe findings from this study provide a foundation for further studies on heterologous biosynthesis of P. cocos secondary metabolites.

Indexed as

PhytosterolsTriterpenesWolfiporiaCRISPR-Cas SystemsGene EditingMolecular Docking SimulationRNA, Guide, CRISPR-Cas SystemsSqualeneSqualene MonooxygenaseTandem Mass SpectrometryPhytosterolsRNA, Guide, CRISPR-Cas SystemsSqualeneSqualene MonooxygenaseTriterpenesCRISPR/Cas9 systemGene functionPoria cocosSqualene epoxidaseTriterpenoids

Identifiers

PMID38273342
PMCPMC10809676
OpenAlexW4391229021

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.