Evidence map›Paper›PMID 38272942›Full record

ArticleScientific reports2024

Clinical and molecular epidemiology of enterovirus D68 from 2013 to 2020 in Shanghai.

Fei Li, Rou-Jian Lu, Yu-Han Zhang, Peng Shi, Yuan-Yun Ao, Lin-Feng Cao, Yu-Lan Zhang, Wen-Jie Tan, Jun Shen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

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  11. Enterovirus D68 and mycobacterial coinfection: case report.Therapeutic advances in infectious disease
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Fei Li *Infectious Disease Department, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
Rou-Jian Lu *National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Yu-Han Zhang *Infectious Disease Department, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
Peng ShiStatistics and Data Management Center, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
Yuan-Yun AoVirology Department, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
Lin-Feng CaoVirology Department, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China.
Yu-Lan ZhangWuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China.
Wen-Jie TanNational Institute for Viral Disease Control and Prevention, China CDC, Beijing, China. tanwj28@163.com.
Jun ShenInfectious Disease Department, Children's Hospital of Fudan University, National Children's Medical Center, Shanghai, China. shenjun_@fudan.edu.cn.
Children's Hospital of Fudan University · CNChinese Academy of Sciences · CNChinese Center For Disease Control and Prevention · CN

Funding

Key Development Program of Children's Hospital of Fudan University EK2022ZX05Shanghai Science and Technology Commission Medical Project 19411972100
6 · The paper itself

Abstract

Enterovirus D68 (EV-D68) is an emerging pathogen that has caused outbreaks of severe respiratory disease worldwide, especially in children. We aim to investigate the prevalence and genetic characteristics of EV-D68 in children from Shanghai. Nasopharyngeal swab or bronchoalveolar lavage fluid samples collected from children hospitalized with community-acquired pneumonia were screened for EV-D68. Nine of 3997 samples were EV-D68-positive. Seven of nine positive samples were sequenced and submitted to GenBank. Based on partial polyprotein gene (3D) or complete sequence analysis, we found the seven strains belong to different clades and subclades, including three D1 (detected in 2013 and 2014), one D2 (2013), one D3 (2019), and two B3 (2014 and 2018). Overall, we show different clades and subclades of EV-D68 spread with low positive rates (0.2%) among children in Shanghai between 2013 and 2020. Amino acid mutations were found in the epitopes of the VP1 BC and DE loops and C-terminus; similarity analysis provided evidence for recombination as an important mechanism of genomic diversification. Both single nucleotide mutations and recombination play a role in evolution of EV-D68. Genetic instability within these clinical strains may indicate large outbreaks could occur following cumulative mutations.

Indexed as

EnterovirusEnterovirus D, HumanEnterovirus InfectionsRespiratory Tract InfectionsChildChinaDisease OutbreaksHumansMolecular EpidemiologyPhylogeny

Identifiers

PMID38272942
PMCPMC10810781
OpenAlexW4391229788

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.