Evidence map›Paper›PMID 38272938›Full record

ArticleNature communications2024

An extensive disulfide bond network prevents tail contraction in Agrobacterium tumefaciens phage Milano.

Ravi R Sonani, Lee K Palmer, Nathaniel C Esteves, Abigail A Horton, Amanda L Sebastian, Rebecca J Kelly, Fengbin Wang, Mark A B Kreutzberger, William K Russell, Petr G Leiman and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

  1. The Lord of the Rings: Cysteine bonds crosslink the tail of siphovirus.Protein science : a publication of the Protein Society · 2026
    Article
  2. Novel LyticViruses · 2026
    Article
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  10. Journal of virology · 2025
    Article
  11. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ravi R SonaniDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.ORCID 0000-0002-6212-2869
Lee K PalmerMass Spectrometry Facility, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Nathaniel C EstevesDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Abigail A HortonDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Amanda L SebastianDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Rebecca J KellyDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Fengbin WangDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.ORCID 0000-0003-1008-663X
Mark A B KreutzbergerDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.
William K RussellMass Spectrometry Facility, University of Texas Medical Branch, Galveston, TX, 77555, USA.ORCID 0000-0003-1931-4555
Petr G LeimanDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA. pgleiman@utmb.edu.ORCID 0000-0002-9091-0918
Birgit E ScharfDepartment of Biological Sciences, Virginia Tech, Blacksburg, VA, 24061, USA. bscharf@vt.edu.ORCID 0000-0001-6271-8972
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA. egelman@virginia.edu.ORCID 0000-0003-4844-5212
Virginia Tech · USThe University of Texas Medical Branch at Galveston · USUniversity of Virginia · USUniversity of Alabama at Birmingham · US

Funding

Women's Oncology Program - WONP30CA044579 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Thomas P. Loughran · 1987 to 2026
$72.1M
Cryo-EM of Helical Protein and Nucleoprotein Polymers at Near Atomic ResolutionR35GM122510 · NIGMS · UNIVERSITY OF VIRGINIA · PI EDWARD H. EGELMAN · 2017 to 2026
$7.3M
Structural and functional determinants of decision-making in bacteriophage host recognitionR01GM139034 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI LEIMAN, PETR G · 2020 to 2023
$1.7M
NCI NIH HHS P30 CA044579NIGMS NIH HHS R01 GM139034NIGMS NIH HHS R35 GM122510
6 · The paper itself

Abstract

A contractile sheath and rigid tube assembly is a widespread apparatus used by bacteriophages, tailocins, and the bacterial type VI secretion system to penetrate cell membranes. In this mechanism, contraction of an external sheath powers the motion of an inner tube through the membrane. The structure, energetics, and mechanism of the machinery imply rigidity and straightness. The contractile tail of Agrobacterium tumefaciens bacteriophage Milano is flexible and bent to varying degrees, which sets it apart from other contractile tail-like systems. Here, we report structures of the Milano tail including the sheath-tube complex, baseplate, and putative receptor-binding proteins. The flexible-to-rigid transformation of the Milano tail upon contraction can be explained by unique electrostatic properties of the tail tube and sheath. All components of the Milano tail, including sheath subunits, are crosslinked by disulfides, some of which must be reduced for contraction to occur. The putative receptor-binding complex of Milano contains a tailspike, a tail fiber, and at least two small proteins that form a garland around the distal ends of the tailspikes and tail fibers. Despite being flagellotropic, Milano lacks thread-like tail filaments that can wrap around the flagellum, and is thus likely to employ a different binding mechanism.

Indexed as

BacteriophagesType VI Secretion SystemsAgrobacterium tumefaciensCell MembraneType VI Secretion Systems

Identifiers

PMID38272938
PMCPMC10811340
OpenAlexW4391261176

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.