Evidence map›Paper›PMID 38271599›Full record

ArticleBiochemistry2024

Design and Characterization of Compact, Programmable, Multistranded Nonimmunostimulatory Nucleic Acid Nanoparticles Suitable for Biomedical Applications.

Ross Brumett, Leyla Danai, Abigail Coffman, Yasmine Radwan, Megan Teter, Hannah Hayth, Erwin Doe, Katelynn Pranger, Sable Thornburgh, Allison Dittmer and 4 more

Abstract read
In one paragraph

Article in Biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ross BrumettDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Leyla DanaiDepartment of Chemistry, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, United States.
Abigail CoffmanDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Yasmine RadwanDepartment of Chemistry, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, United States.
Megan TeterDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Hannah HaythDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Erwin DoeDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.ORCID 0000-0003-3494-5160
Katelynn PrangerDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Sable ThornburghDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Allison DittmerDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.
Zhihai LiDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.ORCID 0000-0001-7162-2673
Tae Jin KimDepartment of Physical Sciences, West Virginia University Institute of Technology, Beckley, West Virginia 25801, United States.
Kirill A AfoninDepartment of Chemistry, University of North Carolina at Charlotte, Charlotte, North Carolina 28223, United States.ORCID 0000-0002-6917-3183
Emil F KhisamutdinovDepartment of Chemistry, Ball State University, Muncie, Indiana 47306, United States.ORCID 0000-0002-1568-4412

Funding

SMART NANPs: new molecular platform for communication with human immune system and modulation of therapeutic responsesR35GM139587 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI AFONIN, KIRILL A · 2021 to 2025
$1.8M
Nucleic Acid Nanoparticle-based Monoclonal Antibody MimicsR15EB031388 · NIBIB · BALL STATE UNIVERSITY · PI KHISAMUTDINOV, EMIL · 2021 to 2025
$1.0M
NIBIB NIH HHS R15 EB031388NIGMS NIH HHS R35 GM139587
6 · The paper itself

Abstract

We report a thorough investigation of the role of single-stranded thymidine (ssT) linkers in the stability and flexibility of minimal, multistranded DNA nanostructures. We systematically explore the impact of varying the number of ssTs in three-way junction motifs (3WJs) on their formation and properties. Through various UV melting experiments and molecular dynamics simulations, we demonstrate that while the number of ssTs minimally affects thermodynamic stability, the increasing ssT regions significantly enhance the structural flexibility of 3WJs. Utilizing this knowledge, we design triangular DNA nanoparticles with varying ssTs, all showing exceptional assembly efficiency except for the 0T triangle. All triangles demonstrate enhanced stability in blood serum and are nonimmunostimulatory and nontoxic in mammalian cell lines. The 4T 3WJ is chosen as the building block for constructing other polygons due to its enhanced flexibility and favorable physicochemical characteristics, making it a versatile choice for creating cost-effective, stable, and functional DNA nanostructures that can be stored in the dehydrated forms while retaining their structures. Our study provides valuable insights into the design and application of nucleic acid nanostructures, emphasizing the importance of understanding stability and flexibility in the realm of nucleic acid nanotechnology. Our findings suggest the intricate connection between these ssTs and the structural adaptability of DNA 3WJs, paving the way for more precise design and engineering of nucleic acid nanosystems suitable for broad biomedical applications.

Indexed as

NanoparticlesNanostructuresNucleic AcidsAnimalsDNAMammalsNanotechnologyNucleic Acid ConformationDNANucleic Acids

Identifiers

PMID38271599
PMCPMC11587934

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.