Evidence map›Paper›PMID 38268779›Full record

ArticleOncology letters2024

Promoter DNA methylation patterns in oral, laryngeal and oropharyngeal anatomical regions are associated with tumor differentiation, nodal involvement and survival.

Bianca Rivera-Peña, Oluwasina Folawiyo, Nitesh Turaga, Rosa J Rodríguez-Benítez, Marcos E Felici, Jaime A Aponte-Ortiz, Francesca Pirini, Sebastián Rodríguez-Torres, Roger Vázquez, Ricardo López and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Oncology letters, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 3 countries.

Bianca Rivera-PeñaDepartment of Biology, University of Puerto Rico, San Juan 00925, Puerto Rico.
Oluwasina FolawiyoDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD 21231, USA.
Nitesh TuragaDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD 21231, USA.
Rosa J Rodríguez-BenítezDepartment of General Social Sciences, Faculty of Social Sciences, University of Puerto Rico, San Juan 00925, Puerto Rico.
Marcos E FeliciOral Health Division, Puerto Rico Department of Health, San Juan 00927, Puerto Rico.
Jaime A Aponte-OrtizDepartment of General Surgery, University of Puerto Rico School of Medicine, San Juan 00936, Puerto Rico.
Francesca PiriniBiosciences Laboratory, IRCCS Instituto Romagnolo per lo Studio dei Tumori 'Dino Amadori', Meldola I-47014, Italy.
Sebastián Rodríguez-TorresDepartment of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.
Roger VázquezDepartment of Biology, University of Puerto Rico, San Juan 00925, Puerto Rico.
Ricardo LópezDepartment of Biology, University of Puerto Rico, San Juan 00925, Puerto Rico.
David SidranskyDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD 21231, USA.
Rafael Guerrero-PrestonDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD 21231, USA.
Adriana BáezDepartment of Pharmacology, University of Puerto Rico School of Medicine, San Juan 00936, Puerto Rico.
University of Puerto Rico System · PRJohns Hopkins University · USIstituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori · ITJohns Hopkins Medicine · USPuerto Rico Department of Health · PRUniversity of Pittsburgh · US

Funding

UPR/MDACC Partnership for Excellence in Cancer Research(Parent Grant U54 CA096297)U54CA096297 · NCI · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI KAREN J ORTIZ · 2002 to 2026
$36.9M
INTEGRATED DEVELOPMENT OF NOVEL MOLECULAR MARKERSU01CA084986 · NCI · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 1999 to 2014
$33.8M
UPR--MEDICAL SCIENCES CAMPUS, MBRS PROGRAMS06GM008224 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI SILVA, WALTER I · 1989 to 2008
$28.0M
RISE Option III: MBRS RISE at the UPR Medical Sciences CampusR25GM061838 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI CADILLA, CARMEN LYDIA · 2000 to 2021
$25.5M
Genone-wide Discovery of Molecular Alterations in Head and Neck CancerRC2DE020957 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI AGRAWAL, NISHANT, SIDRANSKY, DAVID · 2009 to 2010
$2.5M
Precision methylation biomarkers for cervical cancer prevention in low resource settings in Latin AmericaR44CA254690 · NCI · LIFEGENE-BIOMARKS, INC. · PI GUERRERO-PRESTON, RAFAEL · 2021 to 2023
$2.4M
Precision DNA methylation test to reduce oral cancer disparities in African Americans patients residing in low-resource settingsR44CA281719 · NCI · LIFEGENE-BIOMARKS, INC. · PI Rafael Guerrero-Preston · 2023 to 2026
$2.1M
Precision methylation biomarkers linked to cancer disparitiesR44MD014911 · NIMHD · LIFEGENE-BIOMARKS, INC. · PI GUERRERO-PRESTON, RAFAEL · 2019 to 2021
$1.7M
SENTINEL NODE BIOPSY--DEVELOPMENT OF A TRAINING PROGRAM AND PARTICIPATIONP20CA091402 · NCI · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI LOPEZ, REYNOLD · 2001 to 2004
$725k
Epigenomic Markers of HNSCC Survival Across Ethnic GroupsK01CA164092 · NCI · JOHNS HOPKINS UNIVERSITY · PI GUERRERO-PRESTON, RAFAEL · 2011 to 2014
$530k
NCI NIH HHS K01 CA164092NCI NIH HHS P20 CA091402NCI NIH HHS R44 CA254690NCI NIH HHS R44 CA281719NCI NIH HHS U01 CA084986NCI NIH HHS U54 CA096297NIDCR NIH HHS RC2 DE020957NIGMS NIH HHS R25 GM061838NIGMS NIH HHS S06 GM008224NIMHD NIH HHS R44 MD014911
6 · The paper itself

Abstract

Differentially methylated regions (DMRs) can be used as head and neck squamous cell carcinoma (HNSCC) diagnostic, prognostic and therapeutic targets in precision medicine workflows. DNA from 21 HNSCC and 10 healthy oral tissue samples was hybridized to a genome-wide tiling array to identify DMRs in a discovery cohort. Downstream analyses identified differences in promoter DNA methylation patterns in oral, laryngeal and oropharyngeal anatomical regions associated with tumor differentiation, nodal involvement and survival. Genome-wide DMR analysis showed 2,565 DMRs common to the three subsites. A total of 738 DMRs were unique to laryngeal cancer (n=7), 889 DMRs were unique to oral cavity cancer (n=10) and 363 DMRs were unique to pharyngeal cancer (n=6). Based on the genome-wide analysis and a Gene Ontology analysis, 10 candidate genes were selected to test for prognostic value and association with clinicopathological features.

Indexed as

differentially methylated regionsepigenome-wide analysishead and neck squamous cell carcinoma survivalprecision medicineprognostic biomarkers

Identifiers

PMID38268779
PMCPMC10804364
OpenAlexW4390667194

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.