Evidence map›Paper›PMID 38267855›Full record

ArticleBMC genomics2024

Transcriptome analysis reveals the potential mechanism of the response to scale insects in Camellia sasanqua Thunb.

Hongye Zhang, Xubo Wang, Ziyun Yang, Yan Bai, Longqing Chen, Tian Wu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hongye ZhangSchool of Landscape Architecture and Horticulture Sciences, Southwest Forestry University, Kunming, 650224, China.
Xubo WangYunnan Biodiversity Research Institute, Southwest Forestry University, Kunming, 650224, China.
Ziyun YangSchool of Landscape Architecture and Horticulture Sciences, Southwest Forestry University, Kunming, 650224, China.
Yan BaiSchool of Landscape Architecture and Horticulture Sciences, Southwest Forestry University, Kunming, 650224, China.
Longqing ChenSchool of Landscape Architecture and Horticulture Sciences, Southwest Forestry University, Kunming, 650224, China.
Tian WuSchool of Landscape Architecture and Horticulture Sciences, Southwest Forestry University, Kunming, 650224, China. wutianpotato@swfu.edu.cn.
Southwest Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCamellia sasanqua Thunb. is an essential woody ornamental plant. Our continuous observation found that scale insects often infest C. sasanqua all year round in Kunming, China, resulting in poor growth. Scientifically preventing and controlling the infestation of scale insects should be paid attention to, and the mechanism of scale insects influencing C. sasanqua should be used as the research basis.

resultsThe scale insect was identified as Pseudaulacaspis sasakawai Takagi. We analyzed transcriptome sequencing data from leaves of C. sasanqua infested with scale insects. A total of 1320 genes were either up-regulated or down-regulated and differed significantly in response to scale insects. GO (Gene Ontology) annotation analysis showed that the pathway of catalytic activity, binding, membrane part, cell part, and cellular process were affected. KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis showed that most DEGs (differentially expressed genes) involved in plant hormone signal transduction, MAPK signaling pathway, flavonoid biosynthesis, tropane, piperidine and pyridine alkaloid biosynthesis. We also observed that the expression of galactose metabolism and carotenoid biosynthesis were significantly influenced. In addition, qRT-PCR (quantitative real-time PCR) validated the expression patterns of DEGs, which showed an excellent agreement with the transcriptome sequencing.

conclusionsOur transcriptomic analysis revealed that the C. sasanqua had an intricate resistance strategy to cope with scale insect attacks. After sensing the attack signal of scale insects, C. sasanqua activated the early signal MAPK (mitogen-activated protein kinase) to activate further transcription factors and Auxin, ET, JA, ABA, and other plant hormone signaling pathways, ultimately leading to the accumulation of lignin, scopolin, flavonoids and other secondary metabolites, produces direct and indirect resistance to scale insects. Our results suggested that it provided some potential resources of defense genes that would benefit the following resistance breeding in C. sasanqua to scale insects.

Indexed as

CamelliaPlant Growth RegulatorsGene Expression ProfilingPlant BreedingTranscriptomePlant Growth RegulatorsDifferentially expressed genesMAPK signalingPlant hormonePseudaulacaspis sasakawai Takagi, Ornamental plantRNA-SeqTranscription factor

Identifiers

PMID38267855
PMCPMC10807073
OpenAlexW4391174336

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.