Evidence map›Paper›PMID 38267655›Full record

ArticleThe EMBO journal2024

Structural insights into the activation mechanism of antimicrobial GBP1.

Marius Weismehl, Xiaofeng Chu, Miriam Kutsch, Paul Lauterjung, Christian Herrmann, Misha Kudryashev, Oliver Daumke

Open access · diamondAbstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Cell-Autonomous Immunity: From Cytosolic Sensing to Self-Defense.International journal of molecular sciences · 2025
    Review
  10. Structural and functional characterization of the brain-specific dynamin superfamily member RNF112.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Integrative modeling of guanylate binding protein dimers.Protein science : a publication of the Protein Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Marius WeismehlStructural Biology, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), 13125, Berlin, Germany.ORCID http://orcid.org/0000-0001-7583-9095
Xiaofeng ChuIn Situ Structural Biology, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), 13125, Berlin, Germany.ORCID http://orcid.org/0000-0001-6801-3949
Miriam KutschInstitute of Molecular Pathogenicity, Faculty of Mathematics and Natural Sciences, Heinrich Heine University Düsseldorf, 40225, Düsseldorf, Germany.ORCID http://orcid.org/0000-0002-9346-2196
Paul LauterjungFaculty of Chemistry and Biochemistry, Physical Chemistry I, Ruhr-University Bochum, 44801, Bochum, Germany.
Christian HerrmannFaculty of Chemistry and Biochemistry, Physical Chemistry I, Ruhr-University Bochum, 44801, Bochum, Germany.ORCID http://orcid.org/0000-0002-1824-3647
Misha KudryashevIn Situ Structural Biology, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), 13125, Berlin, Germany.ORCID http://orcid.org/0000-0003-3550-6274
Oliver DaumkeStructural Biology, Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), 13125, Berlin, Germany. oliver.daumke@mdc-berlin.de.ORCID http://orcid.org/0000-0002-6190-1414
Max Delbrück Center · DEDuke University · USHeinrich Heine University Düsseldorf · DERuhr University Bochum · DE

Funding

Deutsche Forschungsgemeinschaft (DFG) INST 208/746-1 FUDeutsche Forschungsgemeinschaft (DFG) INST 335/588-1 FUGG
6 · The paper itself

Abstract

The dynamin-related human guanylate-binding protein 1 (GBP1) mediates host defenses against microbial pathogens. Upon GTP binding and hydrolysis, auto-inhibited GBP1 monomers dimerize and assemble into soluble and membrane-bound oligomers, which are crucial for innate immune responses. How higher-order GBP1 oligomers are built from dimers, and how assembly is coordinated with nucleotide-dependent conformational changes, has remained elusive. Here, we present cryo-electron microscopy-based structural data of soluble and membrane-bound GBP1 oligomers, which show that GBP1 assembles in an outstretched dimeric conformation. We identify a surface-exposed helix in the large GTPase domain that contributes to the oligomerization interface, and we probe its nucleotide- and dimerization-dependent movements that facilitate the formation of an antimicrobial protein coat on a gram-negative bacterial pathogen. Our results reveal a sophisticated activation mechanism for GBP1, in which nucleotide-dependent structural changes coordinate dimerization, oligomerization, and membrane binding to allow encapsulation of pathogens within an antimicrobial protein coat.

Indexed as

Anti-Infective AgentsGTP PhosphohydrolasesCryoelectron MicroscopyDynaminsGTP-Binding ProteinsHumansNucleotidesAnti-Infective AgentsDynaminsGBP1 protein, humanGTP-Binding ProteinsGTP PhosphohydrolasesNucleotidesDynamin SuperfamilyElectron MicroscopyGTPaseGuanylate-Binding ProteinsOligomerization

Identifiers

PMID38267655
PMCPMC10897159
OpenAlexW4391160752

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.