Evidence map›Paper›PMID 38266979›Full record

ReviewDrug discovery today2024

Informatic challenges and advances in illuminating the druggable proteome.

Rahil Taujale, Nathan Gravel, Zhongliang Zhou, Wayland Yeung, Krystof Kochut, Natarajan Kannan

Abstract readReview
In one paragraph

Review in Drug discovery today, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Evaluation of Small-Molecule Candidates as Modulators of M-Type KInternational journal of molecular sciences · 2025
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rahil TaujaleDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.
Nathan GravelInstitute of Bioinformatics, University of Georgia, Athens, GA, USA.
Zhongliang ZhouSchool of Computing, University of Georgia, Athens, GA, USA.
Wayland YeungInstitute of Bioinformatics, University of Georgia, Athens, GA, USA.
Krystof KochutSchool of Computing, University of Georgia, Athens, GA, USA.
Natarajan KannanDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA; Institute of Bioinformatics, University of Georgia, Athens, GA, USA. Electronic address: nkannan@uga.edu.

Funding

A data analytics framework for mining the dark kinomeU01CA239106 · NCI · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN, KOCHUT, KRZYSZTOF J · 2019 to 2021
$1.3M
Annotating dark ion-channel functions using evolutionary features, machine learning and knowledge graph mining (Rayna Carter)U01CA271376 · NCI · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN, LU, WEI · 2022 to 2023
$973k
NCI NIH HHS U01 CA239106NCI NIH HHS U01 CA271376
6 · The paper itself

Abstract

The understudied members of the druggable proteomes offer promising prospects for drug discovery efforts. While large-scale initiatives have generated valuable functional information on understudied members of the druggable gene families, translating this information into actionable knowledge for drug discovery requires specialized informatics tools and resources. Here, we review the unique informatics challenges and advances in annotating understudied members of the druggable proteome. We demonstrate the application of statistical evolutionary inference tools, knowledge graph mining approaches, and protein language models in illuminating understudied protein kinases, pseudokinases, and ion channels.

Indexed as

InformaticsProteomeProteomemachine learningnetwork biologyorthologyprotein evolutionsequence embedding

Identifiers

PMID38266979
PMCPMC12285681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.