Evidence map›Paper›PMID 38266652›Full record

ArticleCell reports methods2024

A simple method for rapid cloning of complete herpesvirus genomes.

Jan Knickmann, Laura Staliunaite, Olha Puhach, Eleonore Ostermann, Thomas Günther, Jenna Nichols, Michael A Jarvis, Sebastian Voigt, Adam Grundhoff, Andrew J Davison and 1 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jan KnickmannLeibniz Institute of Virology (LIV), Hamburg, Germany.
Laura StaliunaiteLeibniz Institute of Virology (LIV), Hamburg, Germany.
Olha PuhachLeibniz Institute of Virology (LIV), Hamburg, Germany.
Eleonore OstermannLeibniz Institute of Virology (LIV), Hamburg, Germany.
Thomas GüntherLeibniz Institute of Virology (LIV), Hamburg, Germany.
Jenna NicholsMRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
Michael A JarvisSchool of Biomedical Sciences, University of Plymouth, Plymouth, UK; The Vaccine Group Ltd., Plymouth, UK.
Sebastian VoigtInstitute for Virology, University Hospital Essen, Essen, Germany.
Adam GrundhoffLeibniz Institute of Virology (LIV), Hamburg, Germany.
Andrew J DavisonMRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
Wolfram BruneLeibniz Institute of Virology (LIV), Hamburg, Germany. Electronic address: wolfram.brune@leibniz-liv.de.
Leibniz Institute of Virology (LIV) · DEMRC University of Glasgow Centre for Virus Research · GBEssen University Hospital · DEUniversity of Plymouth · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herpesviruses are large DNA viruses and include important human and veterinary pathogens. Their genomes can be cloned as bacterial artificial chromosomes (BACs) and genetically engineered in Escherichia coli using BAC recombineering methods. While the recombineering methods are efficient, the initial BAC-cloning step remains laborious. To overcome this limitation, we have developed a simple, rapid, and efficient BAC-cloning method based on single-step transformation-associated recombination (STAR) in Saccharomyces cerevisiae. The linear viral genome is directly integrated into a vector comprising a yeast centromeric plasmid and a BAC replicon. Following transfer into E. coli, the viral genome can be modified using standard BAC recombineering techniques. We demonstrate the speed, fidelity, and broad applicability of STAR by cloning two strains of both rat cytomegalovirus (a betaherpesvirus) and Kaposi's sarcoma-associated herpesvirus (a gammaherpesvirus). STAR cloning facilitates the functional genetic analysis of herpesviruses and other large DNA viruses and their use as vaccines and therapeutic vectors.

Indexed as

GammaherpesvirinaeHerpesvirus 8, HumanCloning, MolecularEscherichia coliHumansPlasmidsRecombination, GeneticBACCP: MicrobiologyDNA virusherpesvirusHHV-8KSHVRCMVrecombinationYACYCpyeast

Identifiers

PMID38266652
PMCPMC10921015
OpenAlexW4391132484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.