Evidence map›Paper›PMID 38266021›Full record

ArticlePloS one2024

Secondary metabolites of Trichoderma spp. as EGFR tyrosine kinase inhibitors: Evaluation of anticancer efficacy through computational approach.

H G Gowtham, Prasanna D Revanasiddappa, Mahadevamurthy Murali, Sudarshana Brijesh Singh, M R Abhilash, Sushma Pradeep, Chandan Shivamallu, Raghu Ram Achar, Ekaterina Silina, Victor Stupin and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Ethyl acetate extract ofFrontiers in pharmacology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

H G GowthamDepartment of PG Studies in Biotechnology, Nrupathunga University, Bangalore, Karnataka, India.
Prasanna D RevanasiddappaDepartment of Biotechnology, Siddaganga Institute of Technology, Tumkur, India.
Mahadevamurthy MuraliDepartment of Studies in Botany, University of Mysore, Mysore, Karnataka, India.ORCID 0000-0003-2284-344X
Sudarshana Brijesh SinghDepartment of Studies in Botany, University of Mysore, Mysore, Karnataka, India.
M R AbhilashDepartment of Studies in Environmental Science, University of Mysore, Mysore, India.
Sushma PradeepDepartment of Biotechnology and Bioinformatics, School of Life Sciences, JSS Academy of Higher Education & Research, Mysuru, Karnataka, India.
Chandan ShivamalluDepartment of Biotechnology and Bioinformatics, School of Life Sciences, JSS Academy of Higher Education & Research, Mysuru, Karnataka, India.
Raghu Ram AcharDivision of Biochemistry, School of Life Sciences, JSS Academy of Higher Education and Research, Mysuru, Karnataka, India.
Ekaterina SilinaDepartment of Human Pathology, I.M. Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia.
Victor StupinDepartment of Hospital Surgery, NI. Pirogov Russian National Research Medical University, Moscow, Russia.
Natalia ManturovaDepartment of Hospital Surgery, NI. Pirogov Russian National Research Medical University, Moscow, Russia.
Ali A ShatiBiology Department, Faculty of Science, King Khalid University, Abha, Saudi Arabia.ORCID 0000-0003-1800-7238
Mohammad Y AlfaifiBiology Department, Faculty of Science, King Khalid University, Abha, Saudi Arabia.ORCID 0000-0003-4310-3539
Serag Eldin I ElbehairiBiology Department, Faculty of Science, King Khalid University, Abha, Saudi Arabia.ORCID 0000-0003-4680-3215
Shiva Prasad KollurSchool of Physical Sciences, Amrita Vishwa Vidyapeetham, Mysuru Campus, Mysuru, Karnataka, India.ORCID 0000-0003-3914-3933
JSS Academy of Higher Education and Research · INKing Khalid University · SAUniversity of Mysore · INPirogov Russian National Research Medical University · RUAmrita Vishwa Vidyapeetham · INSechenov University · RUSiddaganga Institute of Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The present study explores the epidermal growth factor receptor (EGFR) tyrosine kinase inhibition efficacy of secondary metabolites in Trichoderma spp. through molecular docking, molecular dynamics (MD) simulation and MM-PBSA approach. The result of molecular docking confirmed that out of 200 metabolites screened, three metabolites such as Harzianelactone A, Pretrichodermamide G and Aspochalasin M, potentially bound with the active binding site of EGFR tyrosine kinase domain(PDB ID: 1M17) with a threshold docking score of ≤- 9.0 kcal/mol when compared with the standard EGFR inhibitor (Erlotinib). The MD simulation was run to investigate the potential for stable complex formation in EGFR tyrosine kinase domain-unbound/lead metabolite (Aspochalasin M)-bound/standard inhibitor (Erlotinib)-bound complex. The MD simulation analysis at 100 ns revealed that Aspochalasin M formed the stable complex with EGFR. Besides, the in silico predication of pharmacokinetic properties further confirmed that Aspochalasin M qualified the drug-likeness rules with no harmful side effects (viz., hERG toxicity, hepatotoxicity and skin sensitization), non-mutagenicity and favourable logBB value. Moreover, the BOILED-Egg model predicted that Aspochalasin M showed a higher gastrointestinal absorption with improved bioavailability when administered orally and removed from the central nervous system (CNS). The results of the computational studies concluded that Aspochalasin M possessed significant efficacy in binding EGFR's active sites compared to the known standard inhibitor (Erlotinib). Therefore, Aspochalasin M can be used as a possible anticancer drug candidate and further in vitro and in vivo experimental validation of Aspochalasin M of Trichoderma spp. are required to determine its anticancer potential.

Indexed as

TrichodermaErbB ReceptorsErlotinib HydrochlorideMolecular Docking SimulationTyrosine Kinase InhibitorsErbB ReceptorsErlotinib HydrochlorideTyrosine Kinase Inhibitors

Identifiers

PMID38266021
PMCPMC10824427
OpenAlexW4391164544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.