Evidence map›Paper›PMID 38263575›Full record

ArticleAging cell2024

DNA methylation and chromatin accessibility predict age in the domestic dog.

Kelly Jin, Brianah M McCoy, Elisabeth A Goldman, Viktoria Usova, Victor Tkachev, Alex D Chitsazan, Anneke Kakebeen, Unity Jeffery, Kate E Creevy, Andrea Wills and 2 more

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Kelly JinDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, Washington, USA.ORCID https://orcid.org/0000-0003-2393-6461
Brianah M McCoyCenter for Evolution and Medicine, Arizona State University, Tempe, Arizona, USA.
Elisabeth A GoldmanDepartment of Anthropology, University of Oregon, Eugene, Oregon, USA.
Viktoria UsovaDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, Washington, USA.
Victor TkachevDivision of Pediatric Hematology/Oncology, Boston Children's Hospital, Boston, Massachusetts, USA.
Alex D ChitsazanDepartment of Biochemistry, University of Washington, Seattle, Washington, USA.
Anneke KakebeenDepartment of Biochemistry, University of Washington, Seattle, Washington, USA.
Unity JefferyCollege of Veterinary Medicine, Texas A & M University, College Station, Texas, USA.
Kate E CreevyCollege of Veterinary Medicine, Texas A & M University, College Station, Texas, USA.
Andrea WillsDepartment of Biochemistry, University of Washington, Seattle, Washington, USA.
Noah Snyder-MacklerCenter for Evolution and Medicine, Arizona State University, Tempe, Arizona, USA.ORCID https://orcid.org/0000-0003-3026-6160
Daniel E L PromislowDepartment of Laboratory Medicine & Pathology, University of Washington, Seattle, Washington, USA.ORCID https://orcid.org/0000-0001-7088-4495
University of Washington · USArizona State University · USTexas College · USBoston Children's Hospital · USUniversity of Oregon · US

Funding

The Dog Aging Project: Genetic and Environmental Determinants of Healthy Aging in Companion Dogs Competitive RevisionU19AG057377 · NIA · UNIVERSITY OF WASHINGTON · PI PROMISLOW, DANIEL EDWARD · 2018 to 2023
$29.0M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
Biological Mechanisms of Healthy Aging Training GrantT32AG066574 · NIA · UNIVERSITY OF WASHINGTON · PI David J. Marcinek, Jessica E Young · 2020 to 2026
$5.3M
Social modifiers of the pace of aging across multiple domains and tissuesR01AG060931 · NIA · UNIVERSITY OF WASHINGTON · PI BRENT, LAUREN JOHANNA NICOLE, HIGHAM, JAMES P · 2019 to 2023
$3.6M
Transcriptional regulatory mechanisms of vertebrate regenerationR01NS099124 · NINDS · UNIVERSITY OF WASHINGTON · PI Andrea Elizabeth Wills · 2017 to 2026
$3.3M
Gene regulatory analysis of social integration and resilience during agingR00AG051764 · NIA · UNIVERSITY OF WASHINGTON · PI SNYDER-MACKLER, NOAH · 2017 to 2019
$746k
Defining the mechanism of chromatin accessibility modifications in vertebrate appendage regenerationR03HD091716 · NICHD · UNIVERSITY OF WASHINGTON · PI WILLS, ANDREA ELIZABETH · 2017 to 2018
$149k
NIA NIH HHS R00 AG051764NIA NIH HHS R00AG051764NIA NIH HHS R01 AG060931NIA NIH HHS R01AG060931NIA NIH HHS T32 AG000057NIA NIH HHS T32AG000057NIA NIH HHS T32 AG066574NIA NIH HHS U19 AG057377NIA NIH HHS U19AG057377NICHD NIH HHS R03 HD091716NINDS NIH HHS R01 NS099124NINDS NIH HHS R01-NS099124
6 · The paper itself

Abstract

Across mammals, the epigenome is highly predictive of chronological age. These "epigenetic clocks," most of which have been built using DNA methylation (DNAm) profiles, have gained traction as biomarkers of aging and organismal health. While the ability of DNAm to predict chronological age has been repeatedly demonstrated, the ability of other epigenetic features to predict age remains unclear. Here, we use two types of epigenetic information-DNAm, and chromatin accessibility as measured by ATAC-seq-to develop age predictors in peripheral blood mononuclear cells sampled from a population of domesticated dogs. We measured DNAm and ATAC-seq profiles for 71 dogs, building separate predictive clocks from each, as well as the combined dataset. We also use fluorescence-assisted cell sorting to quantify major lymphoid populations for each sample. We found that chromatin accessibility can accurately predict chronological age (R

Indexed as

DNA MethylationEpigenesis, GeneticAgingAnimalsChromatinDogsLeukocytes, MononuclearMammalsChromatinagingATAC‐seqDNA methylationdogsepigenetic clock

Identifiers

PMID38263575
PMCPMC11019125
OpenAlexW4391172215

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.