Evidence map›Paper›PMID 38263394›Full record

ArticleScientific reports2024

Multi-channel feature extraction for virtual histological staining of photon absorption remote sensing images.

Marian Boktor, James E D Tweel, Benjamin R Ecclestone, Jennifer Ai Ye, Paul Fieguth, Parsin Haji Reza

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Marian BoktorPhotoMedicine Labs, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada.
James E D TweelPhotoMedicine Labs, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada.
Benjamin R EcclestonePhotoMedicine Labs, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada.
Jennifer Ai YeVision and Image Processing Lab, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada.
Paul FieguthVision and Image Processing Lab, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada.
Parsin Haji RezaPhotoMedicine Labs, University of Waterloo, 200 University Ave W, Waterloo, ON, N2L 3G1, Canada. phajireza@uwaterloo.ca.

Funding

Canada Foundation for Innovation JELF #38000Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada DGECR-2019-00143illumiSonics Inc SRA #083181Mitacs Accelerate IT13594New frontiers in research fund - exploration NFRFE-2019-01012The Canadian Institutes of Health Research CIHR PJT 185984
6 · The paper itself

Abstract

Accurate and fast histological staining is crucial in histopathology, impacting diagnostic precision and reliability. Traditional staining methods are time-consuming and subjective, causing delays in diagnosis. Digital pathology plays a vital role in advancing and optimizing histology processes to improve efficiency and reduce turnaround times. This study introduces a novel deep learning-based framework for virtual histological staining using photon absorption remote sensing (PARS) images. By extracting features from PARS time-resolved signals using a variant of the K-means method, valuable multi-modal information is captured. The proposed multi-channel cycleGAN model expands on the traditional cycleGAN framework, allowing the inclusion of additional features. Experimental results reveal that specific combinations of features outperform the conventional channels by improving the labeling of tissue structures prior to model training. Applied to human skin and mouse brain tissue, the results underscore the significance of choosing the optimal combination of features, as it reveals a substantial visual and quantitative concurrence between the virtually stained and the gold standard chemically stained hematoxylin and eosin images, surpassing the performance of other feature combinations. Accurate virtual staining is valuable for reliable diagnostic information, aiding pathologists in disease classification, grading, and treatment planning. This study aims to advance label-free histological imaging and opens doors for intraoperative microscopy applications.

Indexed as

Remote Sensing TechnologyAnimalsEosine Yellowish-(YS)HematoxylinHumansMiceReproducibility of ResultsStaining and LabelingEosine Yellowish-(YS)Hematoxylin

Identifiers

PMID38263394
PMCPMC10805725

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.