Evidence map›Paper›PMID 38261972›Full record

ArticleNucleic acids research2024

Trans-complementation by the RecB nuclease domain of RecBCD enzyme reveals new insight into RecA loading upon χ recognition.

Theetha L Pavankumar, C Jason Wong, Yun Ka Wong, Maria Spies, Stephen C Kowalczykowski

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Theetha L PavankumarDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA 95616, USA.ORCID 0000-0003-1845-9592
C Jason WongDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA 95616, USA.
Yun Ka WongDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA 95616, USA.
Maria SpiesDepartment of Biochemistry, University of Iowa, Carver College of Medicine, Iowa City, IA 52242, USA.
Stephen C KowalczykowskiDepartment of Microbiology and Molecular Genetics, University of California, Davis, CA 95616, USA.ORCID 0000-0002-9127-3949

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
Single-molecule Visualization and Mechanisms of DNA Recombination and Intersecting DNA TransactionsR35GM131900 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Stephen Charles Kowalczykowski · 2019 to 2026
$6.6M
NCI NIH HHS P30 CA086862NIGMS NIH HHS R35 GM131900NIH HHS R35 GM131900
6 · The paper itself

Abstract

The loading of RecA onto ssDNA by RecBCD is an essential step of RecBCD-mediated homologous recombination. RecBCD facilitates RecA-loading onto ssDNA in a χ-dependent manner via its RecB nuclease domain (RecBn). Before recognition of χ, RecBn is sequestered through interactions with RecBCD. It was proposed that upon χ-recognition, RecBn undocks, allowing RecBn to swing out via a contiguous 70 amino acid linker to reveal the RecA-loading surface, and then recruit and load RecA onto ssDNA. We tested this hypothesis by examining the interactions between RecBn (RecB928-1180) and truncated RecBCD (RecB1-927CD) lacking the nuclease domain. The reconstituted complex of RecB1-927CD and RecBn is functional in vitro and in vivo. Our results indicate that despite being covalently severed from RecB1-927CD, RecBn can still load RecA onto ssDNA, establishing that RecBn does not function while only remaining tethered to the RecBCD complex via the linker. Instead, RecBCD undergoes a χ-induced intramolecular rearrangement to reveal the RecA-loading surface.

Indexed as

Escherichia coli ProteinsExodeoxyribonuclease VRec A RecombinasesDNA-Binding ProteinsDNA, Single-StrandedEndonucleasesExodeoxyribonucleasesDNA-Binding ProteinsDNA, Single-StrandedEndonucleasesEscherichia coli ProteinsExodeoxyribonucleasesExodeoxyribonuclease Vexodeoxyribonuclease V, E colirecA protein, E coliRec A Recombinases

Identifiers

PMID38261972
PMCPMC10954480

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.