Evidence map›Paper›PMID 38260847›Full record

ArticleFrontiers in oncology2023

Associations between genetic variants in sphingolipid metabolism pathway genes and hepatitis B virus-related hepatocellular carcinoma survival.

Binbin Jiang, Moqin Qiu, Liming Qin, Jingmei Tang, Shicheng Zhan, Qiuling Lin, Junjie Wei, Yingchun Liu, Zihan Zhou, Xiumei Liang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Binbin Jiang *Department of Experimental Research, Guangxi Medical University Cancer Hospital, Nanning, China.
Moqin Qiu *Department of Respiratory Oncology, Guangxi Medical University Cancer Hospital, Nanning, China.
Liming QinDepartment of Epidemiology and Health Statistics, School of Public Health, Guangxi Medical University, Nanning, China.
Jingmei TangDepartment of Epidemiology and Health Statistics, School of Public Health, Guangxi Medical University, Nanning, China.
Shicheng ZhanDepartment of Epidemiology and Health Statistics, School of Public Health, Guangxi Medical University, Nanning, China.
Qiuling LinDepartment of Clinical Research, Guangxi Medical University Cancer Hospital, Nanning, China.
Junjie WeiDepartment of Epidemiology and Health Statistics, School of Public Health, Guangxi Medical University, Nanning, China.
Yingchun LiuDepartment of Experimental Research, Guangxi Medical University Cancer Hospital, Nanning, China.
Zihan ZhouDepartment of Cancer Prevention and Control, Guangxi Medical University Cancer Hospital, Nanning, China.
Xiumei LiangDepartment of Disease Process Management, Guangxi Medical University Cancer Hospital, Nanning, China.
Ji CaoDepartment of Cancer Prevention and Control, Guangxi Medical University Cancer Hospital, Nanning, China.
Jiawei LianDepartment of Epidemiology and Health Statistics, School of Public Health, Guangxi Medical University, Nanning, China.
Yuejiao MaiDepartment of Epidemiology and Health Statistics, School of Public Health, Guangxi Medical University, Nanning, China.
Yanji JiangDepartment of Scientific Research Dept, Guangxi Medical University Cancer Hospital, Nanning, China.
Hongping YuDepartment of Experimental Research, Guangxi Medical University Cancer Hospital, Nanning, China.
Guangxi Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Although the sphingolipid metabolism pathway is known to play a significant role in tumor progression, there have been few studies on how genetic variants in the sphingolipid metabolism pathway genes affect the survival of patients with hepatitis B virus (HBV)-related hepatocellular carcinoma (HCC). Methods: We utilized available genotyping data to conduct multivariate Cox proportional hazards regression model analysis, examining the associations of 12,188 single nucleotide polymorphisms (SNPs) in 86 sphingolipid metabolism pathway genes on the survival of 866 HBV-HCC patients, and the model was also used in additive interaction analysis. We used bioinformatics functional prediction and expression quantitative trait locus (eQTL) analysis to explore the potential functions of SNPs and to evaluate the association of SNPs with the corresponding mRNA expression, respectively. We also used the online database TIMER2.0 (http://timer.comp-genomics.org/) to analyze the relationship between the corresponding mRNA expression levels and immune cell infiltration. Results: Our study found that Conclusion: Our findings suggest that GBA2 rs1570247 G>A in sphingolipid metabolism pathway may be a key factor for survival of HBV-HCC patients by regulating the expression of corresponding genes and affecting the infiltration level of immune cells.

Indexed as

GBA2hepatocellular carcinomaoverall survivalsingle nucleotide polymorphismsphingolipid metabolism

Identifiers

PMID38260847
PMCPMC10801735
OpenAlexW4390670234

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.