Evidence map›Paper›PMID 38260684›Full record

ArticlebioRxiv : the preprint server for biology2024

Energy allocation theory for bacterial growth control in and out of steady state.

Arianna Cylke, Diana Serbanescu, Shiladitya Banerjee

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Arianna CylkeDepartment of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Diana SerbanescuDepartment of Physics and Astronomy, University College London, London WC1E 6BT, UK.
Shiladitya BanerjeeDepartment of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.ORCID 0000-0001-8000-2556
Carnegie Mellon University · USUniversity College London · GB

Funding

Biophysical models and mechanisms for cellular adaptation to environmental stressR35GM143042 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI BANERJEE, SHILADITYA · 2021 to 2025
$1.6M
NIGMS NIH HHS R35 GM143042
6 · The paper itself

Abstract

Efficient allocation of energy resources to key physiological functions allows living organisms to grow and thrive in diverse environments and adapt to a wide range of perturbations. To quantitatively understand how unicellular organisms utilize their energy resources in response to changes in growth environment, we introduce a theory of dynamic energy allocation which describes cellular growth dynamics based on partitioning of metabolizable energy into key physiological functions: growth, division, cell shape regulation, energy storage and loss through dissipation. By optimizing the energy flux for growth, we develop the equations governing the time evolution of cell morphology and growth rate in diverse environments. The resulting model accurately captures experimentally observed dependencies of bacterial cell size on growth rate, superlinear scaling of metabolic rate with cell size, and predicts nutrient-dependent trade-offs between energy expended for growth, division, and shape maintenance. By calibrating model parameters with available experimental data for the model organism

Identifiers

PMID38260684
PMCPMC10802433
OpenAlexW4390708430

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.