Evidence map›Paper›PMID 38260253›Full record

ArticlebioRxiv : the preprint server for biology2024

Impaired biogenesis of basic proteins impacts multiple hallmarks of the aging brain.

Domenico Di Fraia, Antonio Marino, Jae Ho Lee, Erika Kelmer Sacramento, Mario Baumgart, Sara Bagnoli, Pedro Tomaz da Silva, Amit Kumar Sahu, Giacomo Siano, Max Tiessen and 5 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 13 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Domenico Di FraiaLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.ORCID 0000-0003-4270-8464
Antonio MarinoLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.ORCID 0000-0002-2786-316X
Jae Ho LeeDepartment of Biology, Stanford University, Stanford, CA, USA.
Erika Kelmer SacramentoLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Mario BaumgartLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Sara BagnoliBIO@SNS, Scuola Normale Superiore, Pisa, Italy.
Pedro Tomaz da SilvaSchool of Computation, Information and Technology, Technical University of Munich, Garching, Germany.
Amit Kumar SahuLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Giacomo SianoBIO@SNS, Scuola Normale Superiore, Pisa, Italy.
Max TiessenLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Eva Terzibasi-TozziniBIO@SNS, Scuola Normale Superiore, Pisa, Italy.
Julien GagneurSchool of Computation, Information and Technology, Technical University of Munich, Garching, Germany.ORCID 0000-0002-8924-8365
Judith FrydmanDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-2302-6943
Alessandro CellerinoLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Alessandro OriLeibniz Institute on Aging - Fritz Lipmann Institute (FLI), Jena, Germany.
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEScuola Normale Superiore · ITStanford University · USHelmholtz Zentrum München · DEMunich Center for Machine Learning

Funding

The proteasome in aging and neurodegenerative diseaseP01AG054407 · NIA · NORTHWESTERN UNIVERSITY · PI FINLEY, DANIEL J · 2018 to 2022
$14.0M
Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
NIA NIH HHS P01 AG054407NIA NIH HHS T32 AG000266
6 · The paper itself

Abstract

Aging and neurodegeneration entail diverse cellular and molecular hallmarks. Here, we studied the effects of aging on the transcriptome, translatome, and multiple layers of the proteome in the brain of a short-lived killifish. We reveal that aging causes widespread reduction of proteins enriched in basic amino acids that is independent of mRNA regulation, and it is not due to impaired proteasome activity. Instead, we identify a cascade of events where aberrant translation pausing leads to reduced ribosome availability resulting in proteome remodeling independently of transcriptional regulation. Our research uncovers a vulnerable point in the aging brain's biology - the biogenesis of basic DNA/RNA binding proteins. This vulnerability may represent a unifying principle that connects various aging hallmarks, encompassing genome integrity and the biosynthesis of macromolecules.

Indexed as

agingbrainkillifishmitochondriapost-translational modificationproteasomeprotein aggregationproteomeribosometranslation

Identifiers

PMID38260253
PMCPMC10802395
OpenAlexW4385198978

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.