Evidence map›Paper›PMID 38259805›Full record

ArticleERJ open research2024

A fully automated pipeline for the extraction of pectoralis muscle area from chest computed tomography scans.

Daniel Genkin, Alex R Jenkins, Nikki van Noord, Kalysta Makimoto, Sophie Collins, Michael K Stickland, Wan C Tan, Jean Bourbeau, Dennis Jensen, Miranda Kirby

Abstract read
In one paragraph

Article in ERJ open research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Daniel GenkinDepartment of Electrical, Computer, and Biomedical Engineering, Toronto Metropolitan University, Toronto, Canada.ORCID https://orcid.org/0000-0001-5062-4821
Alex R JenkinsClinical Exercise and Respiratory Physiology Laboratory, Department of Kinesiology and Physical Education, McGill University, Montreal, Canada.
Nikki van NoordClinical Exercise and Respiratory Physiology Laboratory, Department of Kinesiology and Physical Education, McGill University, Montreal, Canada.
Kalysta MakimotoDepartment of Physics, Toronto Metropolitan University, Toronto, Canada.ORCID https://orcid.org/0000-0002-1927-7056
Sophie CollinsDepartment of Medicine, University of Alberta, Edmonton, Canada.
Michael K SticklandDepartment of Medicine, University of Alberta, Edmonton, Canada.
Wan C TanCenter for Heart, Lung Innovation, University of British Columbia, Vancouver, Canada.
Jean BourbeauMontreal Chest Institute of the Royal Victoria Hospital, McGill University Health Centre, Montreal, Canada.ORCID https://orcid.org/0000-0002-7649-038X
Dennis JensenClinical Exercise and Respiratory Physiology Laboratory, Department of Kinesiology and Physical Education, McGill University, Montreal, Canada.
Miranda KirbyDepartment of Physics, Toronto Metropolitan University, Toronto, Canada.ORCID https://orcid.org/0000-0003-2951-784X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Computed tomography (CT)-derived pectoralis muscle area (PMA) measurements are prognostic in people with or at-risk of COPD, but fully automated PMA extraction has yet to be developed. Our objective was to develop and validate a PMA extraction pipeline that can automatically: 1) identify the aortic arch slice; and 2) perform pectoralis segmentation at that slice. Methods: CT images from the Canadian Cohort of Obstructive Lung Disease (CanCOLD) study were used for pipeline development. Aorta atlases were used to automatically identify the slice containing the aortic arch by group-based registration. A deep learning model was trained to segment the PMA. The pipeline was evaluated in comparison to manual segmentation. An external dataset was used to evaluate generalisability. Model performance was assessed using the Dice-Sorensen coefficient (DSC) and PMA error. Results: In total 90 participants were used for training (age 67.0±9.9 years; forced expiratory volume in 1 s (FEV Conclusion: A fully automated CT PMA extraction pipeline was developed and validated for use in research and clinical practice.

Identifiers

PMID38259805
PMCPMC10801752

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.