Evidence map›Paper›PMID 38259465›Full record

ArticleFrontiers in immunology2023

Identification and verification of diagnostic biomarkers based on mitochondria-related genes related to immune microenvironment for preeclampsia using machine learning algorithms.

Pu Huang, Yuchun Song, Yu Yang, Feiyue Bai, Na Li, Dan Liu, Chunfang Li, Xuelan Li, Wenli Gou, Lu Zong

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Pu Huang *Department of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Yuchun Song *Department of Gynecology and Obstetrics, Yantai Affiliated Hospital of Binzhou Medical University, Yantai, Shandong, China.
Yu YangDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Feiyue BaiDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Na LiDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Dan LiuDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Chunfang LiDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Xuelan LiDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Wenli GouDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
Lu ZongDepartment of Obstetrics & Gynecology, the First Affiliated Hospital of Xi'an Jiaotong University, Xian, Shaanxi, China.
First Affiliated Hospital of Xi'an Jiaotong University · CNBinzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Preeclampsia is one of the leading causes of maternal and fetal morbidity and mortality worldwide. Preeclampsia is linked to mitochondrial dysfunction as a contributing factor in its progression. This study aimed to develop a novel diagnostic model based on mitochondria-related genes(MRGs) for preeclampsia using machine learning and further investigate the association of the MRGs and immune infiltration landscape in preeclampsia. In this research, we analyzed GSE75010 database and screened 552 DE-MRGs between preeclampsia samples and normal samples. Enrichment assays indicated that 552 DE-MRGs were mainly related to energy metabolism pathway and several different diseases. Then, we performed LASSO and SVM-RFE and identified three critical diagnostic genes for preeclampsia, including CPOX, DEGS1 and SH3BP5. In addition, we developed a novel diagnostic model using the above three genes and its diagnostic value was confirmed in GSE44711, GSE75010 datasets and our cohorts. Importantly, the results of RT-PCR confirmed the expressions of CPOX, DEGS1 and SH3BP5 were distinctly increased in preeclampsia samples compared with normal samples. The results of the CIBERSORT algorithm revealed a striking dissimilarity between the immune cells found in preeclampsia samples and those found in normal samples. In addition, we found that the levels of SH3BP5 were closely associated with several immune cells, highlighting its potential involved in immune microenvironment of preeclampsia. Overall, this study has provided a novel diagnostic model and diagnostic genes for preeclampsia while also revealing the association between MRGs and immune infiltration. These findings offer valuable insights for further research and treatment of preeclampsia.

Indexed as

Pre-EclampsiaAlgorithmsBiomarkersDNA, MitochondrialFemaleHumansMachine LearningMitochondriaPregnancyBiomarkersDNA, Mitochondrialdiagnostic modelimmune microenvironmentmachine learningmitochondria-related genespreeclampsia

Identifiers

PMID38259465
PMCPMC10800455
OpenAlexW4390665977

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.