Evidence map›Paper›PMID 38257776›Full record

ArticleViruses2024

Elucidating the Molecular Determinants of the Binding Modes of a Third-Generation HIV-1 Integrase Strand Transfer Inhibitor: The Importance of Side Chain and Solvent Reorganization.

Qinfang Sun, Avik Biswas, Dmitry Lyumkis, Ronald Levy, Nanjie Deng

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Qinfang SunCenter for Biophysics and Computational Biology and Department of Chemistry, Temple University, Philadelphia, PA 19122, USA.
Avik BiswasLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.ORCID 0000-0002-3519-3944
Dmitry LyumkisLaboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Ronald LevyCenter for Biophysics and Computational Biology and Department of Chemistry, Temple University, Philadelphia, PA 19122, USA.
Nanjie DengDepartment of Chemistry and Physical Sciences, Pace University, New York, NY 10038, USA.
Salk Institute for Biological Studies · USTemple University · USPace University · US

Funding

Structural Biology CoreU54AI170855 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Stefan G Sarafianos, Bruce Edward Torbett · 2022 to 2026
$36.7M
X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI TORBETT, BRUCE EDWARD · 2019 to 2021
$15.7M
Structural basis for activity of and resistance to HIV integrase inhibitorsU01AI136680 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LYUMKIS, DMITRY · 2022 to 2025
$3.4M
Novel mechanism of integrase (IN) resistance to Dolutegravir through epistatic interactions between IN and the nucleocapsid and polypurine tract regions of HIV-1R01AI146017 · NIAID · EMORY UNIVERSITY · PI HACHIYA, ATSUKO, LYUMKIS, DMITRY · 2019 to 2023
$2.6M
Computer Cluster for Computational Biology and BiophysicsS10OD020095 · OD · TEMPLE UNIV OF THE COMMONWEALTH · PI LEVY, RONALD · 2015 to 2015
$442k
HUMAN TUMOR SUPPRESSOR GENESK11CA001495 · NCI · JOHNS HOPKINS UNIVERSITY · PI SIMONS, JONATHAN W · 1990 to 1994
–
NIAID NIH HHS R01 AI146017NIAID NIH HHS U01 AI136680NIAID NIH HHS U54 AI150472NIAID NIH HHS U54 AI170855NIH HHS 5U54AI150472NIH HHS P30 CA01495NIH HHS R01 AI146017NIH HHS S10 OD020095NIH HHS U01 AI136680
6 · The paper itself

Abstract

The first- and second-generation clinically used HIV-1 integrase (IN) strand transfer inhibitors (INSTIs) are key components of antiretroviral therapy (ART), which work by blocking the integration step in the HIV-1 replication cycle that is catalyzed by a nucleoprotein assembly called an intasome. However, resistance to even the latest clinically used INSTIs is beginning to emerge. Developmental third-generation INSTIs, based on naphthyridine scaffolds, are promising candidates to combat drug-resistant viral variants. Among these novel INSTIs, compound

Indexed as

HIV-1HIV IntegraseHIV SeropositivityBinding SitesCatalysisHumansLigandsHIV IntegraseLigandsp31 integrase protein, Human immunodeficiency virus 1binding modesconformational entropyconformational free energyfree energy methodINSTIsmolecular dynamicsnaphthyridineside chain reorganizationsolvent reorganization

Identifiers

PMID38257776
PMCPMC11154245
OpenAlexW4390504724

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.