Evidence map›Paper›PMID 38256807›Full record

ArticlePlants (Basel, Switzerland)2024

Transcriptome Profiling of a Soybean Mutant with Salt Tolerance Induced by Gamma-ray Irradiation.

Byeong Hee Kang, Sreeparna Chowdhury, Se-Hee Kang, Seo-Young Shin, Won-Ho Lee, Hyeon-Seok Lee, Bo-Keun Ha

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Byeong Hee KangDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Republic of Korea.ORCID 0009-0006-0446-1842
Sreeparna ChowdhuryDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Republic of Korea.
Se-Hee KangDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Republic of Korea.
Seo-Young ShinDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Republic of Korea.
Won-Ho LeeDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Republic of Korea.
Hyeon-Seok LeeNational Institute of Crop Science, RDA, Wanju 55365, Republic of Korea.
Bo-Keun HaDepartment of Applied Plant Science, Chonnam National University, Gwangju 61186, Republic of Korea.ORCID 0000-0002-2295-365X
Chonnam National University · KR

Funding

Rural Development Administration PJ015013
6 · The paper itself

Abstract

Salt stress is a significant abiotic stress that reduces crop yield and quality globally. In this study, we utilized RNA sequencing (RNA-Seq) to identify differentially expressed genes (DEGs) in response to salt stress induced by gamma-ray irradiation in a salt-tolerant soybean mutant. The total RNA library samples were obtained from the salt-sensitive soybean cultivar Kwangan and the salt-tolerant mutant KA-1285. Samples were taken at three time points (0, 24, and 72 h) from two tissues (leaves and roots) under 200 mM NaCl. A total of 967,719,358 clean reads were generated using the Illumina NovaSeq 6000 platform, and 94.48% of these reads were mapped to 56,044 gene models of the soybean reference genome (Glycine_max_Wm82.a2.v1). The DEGs with expression values were compared at each time point within each tissue between the two soybeans. As a result, 296 DEGs were identified in the leaves, while 170 DEGs were identified in the roots. In the case of the leaves, eight DEGs were related to the phenylpropanoid biosynthesis pathway; however, in the roots,

Indexed as

GmSalt3mutantphenylpropanoid pathwaysalt tolerantsoybeantranscriptome

Identifiers

PMID38256807
PMCPMC10818854
OpenAlexW4390917980

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.