Evidence map›Paper›PMID 38256804›Full record

ArticlePlants (Basel, Switzerland)2024

Genetic Variation and Evolutionary Analysis of Eggplant Mottled Dwarf Virus Isolates from Spain.

Ana Alfaro-Fernández, Rafael Taengua, Isabel Font-San-Ambrosio, Esmeralda Sanahuja-Edo, Rosa Peiró, Luis Galipienso, Luis Rubio

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ana Alfaro-FernándezInstituto Agroforestal Mediterráneo (IAM), Universitat Politècnica de València (UPV), 46022 Valencia, Valencia, Spain.ORCID 0000-0002-5049-7698
Rafael TaenguaInstituto Valenciano de Investigaciones Agrarias (IVIA), 46113 Moncada, Valencia, Spain.
Isabel Font-San-AmbrosioInstituto Agroforestal Mediterráneo (IAM), Universitat Politècnica de València (UPV), 46022 Valencia, Valencia, Spain.ORCID 0000-0002-2345-2857
Esmeralda Sanahuja-EdoInstituto Agroforestal Mediterráneo (IAM), Universitat Politècnica de València (UPV), 46022 Valencia, Valencia, Spain.
Rosa PeiróInstituto de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV), Universitat Politècnica de València (UPV), 46022 Valencia, Valencia, Spain.ORCID 0000-0002-3009-2343
Luis GalipiensoInstituto Valenciano de Investigaciones Agrarias (IVIA), 46113 Moncada, Valencia, Spain.ORCID 0000-0003-0394-3285
Luis RubioInstituto Valenciano de Investigaciones Agrarias (IVIA), 46113 Moncada, Valencia, Spain.ORCID 0000-0002-7964-3062
Universitat Politècnica de València · ESInstituto Valenciano de Investigaciones Agrarias · ES

Funding

Ministerio de Ciencia e Innovación PID2021-125787OR-C31
6 · The paper itself

Abstract

The genetic variation and population structure of gene N (nucleocapsid) and part of gene L (replicase) from 13 eggplant mottle dwarf virus (EMDV) isolates from Spain were evaluated and compared with sequences of EMDV isolates from other countries retrieved from GenBank. Phylogenetic inference of part of gene L showed three main clades, one containing an EMDV isolate from Australia and the other two containing isolates from Iran and Europe, as well as four subclades. EMDV isolates from Spain were genetically very similar and grouped in a subclade together with one isolate from Germany and one from the UK. No new recombination events were detected in addition to one recombination previously reported, suggesting that recombination is rare for EMDV. The comparison of synonymous and non-synonymous rates showed that negative selection played an important role, and only two codons were under positive selection. Genetic differentiation (F

Indexed as

Alphanucleorhabdovirus melongenaegene flownegative-strand RNA virusnucleotide diversityphylogenyrecombinationselection

Identifiers

PMID38256804
PMCPMC10818716
OpenAlexW4390918228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.