Evidence map›Paper›PMID 38255730›Full record

ArticleLife (Basel, Switzerland)2024

Simple and Effective Squash-PCR for Rapid Genotyping of Industrial Microalgae.

Guoliang Yuan, Song Gao, Jeffrey J Czajka, Ziyu Dai, Kyle R Pomraning, Rylan D Duong, Beth A Hofstad, Shuang Deng

Abstract read
In one paragraph

Article in Life (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guoliang YuanChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.ORCID 0000-0002-6562-8769
Song GaoMarine and Coastal Research Laboratory, Pacific Northwest National Laboratory, Sequim, WA 98382, USA.ORCID 0000-0002-7210-4445
Jeffrey J CzajkaChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Ziyu DaiChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Kyle R PomraningChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Rylan D DuongChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Beth A HofstadChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Shuang DengChemical and Biological Processes Development Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.ORCID 0000-0002-7265-9328

Funding

Department of Energy and Environment DE-NL0030038
6 · The paper itself

Abstract

Microalgae are recognized for their versatility in providing renewable energy, biopharmaceuticals, and nutraceuticals, attributed to their sustainable, renewable, and cost-effective nature. Genetic engineering has proven highly effective in enhancing microalgae production. PCR-based genotyping is the primary method for screening genetically transformed microalgae cells. Recently, we developed a novel PCR method, namely Squash-PCR, and employed it for the molecular analysis of industrially important fungi and yeasts. In this study, we successfully implemented the Squash-PCR technique in 12 industrially significant algae species. This approach offers a quick and reliable means of obtaining DNA templates directly from squashed algal cells, eliminating the need for time-consuming and labor-intensive cultivation and genomic DNA extraction steps. Our results demonstrate the effectiveness of Squash-PCR in detecting and characterizing target genes of interest in 12 different algae species. Overall, this study establishes the Squash-PCR method as a valuable tool for molecular studies in algae, enabling researchers to rapidly screen and manipulate genetic traits in diverse algal species.

Indexed as

colony PCRgenetic screeninggenotypingmicroalgaeSquash-PCR

Identifiers

PMID38255730
PMCPMC10817518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.