Evidence map›Paper›PMID 38255705›Full record

ArticleLife (Basel, Switzerland)2024

Improving Tumor-Infiltrating Lymphocytes Score Prediction in Breast Cancer with Self-Supervised Learning.

Sijin Kim, Kazi Rakib Hasan, Yu Ando, Seokhwan Ko, Donghyeon Lee, Nora Jee-Young Park, Junghwan Cho

Abstract read
In one paragraph

Article in Life (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sijin KimDepartment of Biomedical Science, Kyungpook National University, Daegu 41566, Republic of Korea.ORCID 0000-0002-5064-6120
Kazi Rakib HasanDepartment of Biomedical Science, Kyungpook National University, Daegu 41566, Republic of Korea.ORCID 0000-0002-9967-1538
Yu AndoDepartment of Biomedical Science, Kyungpook National University, Daegu 41566, Republic of Korea.ORCID 0000-0002-6509-1682
Seokhwan KoDepartment of Biomedical Science, Kyungpook National University, Daegu 41566, Republic of Korea.ORCID 0009-0006-3870-1381
Donghyeon LeeDepartment of Biomedical Science, Kyungpook National University, Daegu 41566, Republic of Korea.
Nora Jee-Young ParkDepartment of Pathology, School of Medicine, Kyungpook National University, Daegu 41944, Republic of Korea.
Junghwan ChoClinical Omics Institute, Kyungpook National University, Daegu 41405, Republic of Korea.ORCID 0000-0002-9715-1440

Funding

This research was supported by a grant from the Brain Pool Program through the National Research Foundation of Korea funded by the Ministry of Science and ICT (No.2022H1D3A2A01096490) and the Ministry of Education (2021R1I1A3056903). 2022H1D3A2A01096490, 2021R1I1A3056903
6 · The paper itself

Abstract

Tumor microenvironment (TME) plays a pivotal role in immuno-oncology, which investigates the intricate interactions between tumors and the human immune system. Specifically, tumor-infiltrating lymphocytes (TILs) are crucial biomarkers for evaluating the prognosis of breast cancer patients and have the potential to refine immunotherapy precision and accurately identify tumor cells in specific cancer types. In this study, we conducted tissue segmentation and lymphocyte detection tasks to predict TIL scores by employing self-supervised learning (SSL) model-based approaches capable of addressing limited labeling data issues. Our experiments showed a 1.9% improvement in tissue segmentation and a 2% improvement in lymphocyte detection over the ImageNet pre-training model. Using these SSL-based models, we achieved a TIL score of 0.718 with a 4.4% improvement. In particular, when trained with only 10% of the entire dataset, the SwAV pre-trained model exhibited a superior performance over other models. Our work highlights improved tissue segmentation and lymphocyte detection using the SSL model with less labeled data for TIL score prediction.

Indexed as

breast cancerhistopathologyself-supervised learningtissue segmentation and lymphocyte detectiontumor-infiltrating lymphocytes

Identifiers

PMID38255705
PMCPMC11154396

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.